Petr Parik | 7 Jan 15:53 2016

Minor bugs report & question

Hello developers,

a fix to the following minor bugs would be most appreciated:

#1: If a module IS NOT documented its members still appear in the "File 
Reference" page.

#2: If a module IS documented but the file itself is not the module 
still appears in the "Modules List" page and "Module Reference" page.

I am including minimum working examples (Fortran).

Best regards,

Petr Parik

P.S. If a module is documented but some of its members are not, should 
those undocumented members be included in the "Module Reference" page 

INPUT                = test1.f
C> \file
C> The modules are not documented so their members should not be included in the documentation.
(Continue reading)

Gautier | 3 Dec 21:34 2015


Hi list;

As stated on Github[1], I would like to add an option behaving similarly 
to compilers' -Werror option: any warning generated during Doxygen 
execution will abort it immediately.

This option is, in my opinion, valuable to keep documentation up-to-date 
with code changes, specially when multiple people are working altogether.
I will not blame anyone to not think all consequence of a code change, 
but scripts can help him/her from breaking anything:

* strict compiler options (-Werror, -Wall, etc.) prevents at least some 
quick&dirty code and obvious bugs. Compilers will warn beginners about 
code which will not work (out of bounds errors, etc.), but most of the 
time it's simply about a typo / useless dead code.
* Git hook preventing users from pushing invalid commits [2]. We are 
intensively using git submodules for instance - it's quite easy to push 
an invalid submodule reference to git:
     * if you forgot to run "git submodule update --recursive" after 
pulling remote changes following by a "git commit -a", leading to 
unwilling submodule downgrading.
     * if you're referencing a new submodule revision... which you 
forgot to push first!
* To have better code consistency, following a single code style using 
clang-format[3], similarly to what systemd does[4].

I think that all of us already encountered one or several of these 
issues at least once ;-). Having tools checking these errors 
automatically allow me not to worry about it anymore.
Our documentation contains nowadays many errors simply because Doxygen 
(Continue reading)

c.buhtz | 18 Nov 21:49 2015

(some) inheritance are ignored if is empty

Related to <>

I try to use Doxygen with Python-code. But I have some problems with
the inheritance and how this is displayed in the generated docs.

I generated documentation with Doxygen (in default configuration) for
the code below. But the problem is that a.ABase in the inheritance tree
of B-docu is not linkable/clickable. Even when you look at the tree for
a.ABase the class B is not shown.

This depends on the existence of the file. I don't know
why. When I delete the everything is fine.

Can someone check that if it is reproducable?

GnuPGP-Key ID 0751A8EC


[PATCH] Decrease CMake version

Signed-off-by: Brilliantov Kirill Vladimirovich <brilliantov <at>>
 CMakeLists.txt     | 2 +-
 src/CMakeLists.txt | 8 ++++----
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 3695093..0b5308c 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
 <at>  <at>  -11,7 +11,7  <at>  <at> 
 # Documents produced by Doxygen are derivative works derived from the
 # input used in their production; they are not affected by this license.

-cmake_minimum_required(VERSION 2.8.12)
+cmake_minimum_required(VERSION 2.8.11)

 option(build_wizard    "Build the GUI frontend for doxygen." OFF)
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 155bf77..4532b97 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
 <at>  <at>  -17,8 +17,8  <at>  <at>  file(GLOB LANGUAGE_FILES "${CMAKE_SOURCE_DIR}/src/translator_??.h")
 add_definitions(-DYY_BUF_SIZE=262144 -DYY_READ_BUF_SIZE=262144)

 # generate settings.h
+file(WRITE ${GENERATED_SRC}/settings.h
(Continue reading)

Kevin McBride | 2 Aug 22:31 2015

Getting Debug Info Built in the Sources


As a tip for developers new to CMake, I use the following command to 
build doxygen and the doxywizard with debug symbols that gdb can use:

"cmake -G "Unix Makefiles" -Dbuild_wizard=on -DCMAKE_BUILD_TYPE=Debug 

This is a necessity on Fedora to get stack traces from crashers.

I think this information should be put in the BUILD.txt file in GIT.

- Kevin McBride

Phyks | 18 Jun 12:44 2015

Issue with # in inline code in markdown


I have an issue with preprocessor directives in inline code in Markdown 
readme included in Doxygen doc. When compiling the file, I get

``` warning: explicit link request to 'if' could not be 

Due to the line in the README.

* Code should **never** be commented out. To temporarily comment some 
code, use `#if 0` preprocessor directive.

It compiles fine, but there is still a warning during compilation.

Note also that the warning message refers to line 175 although my file has only 169 lines (and the faulty one is the last one).



Phyks | 18 Jun 12:48 2015

Warning: Unexpected html tag <img> found within <a href=...> context


I've just encountered this issue in a Markdown file:

However, according to the thread, I understand it was fixed in 1.2.6 and 
I am using



Alexander.Elgert | 27 May 20:12 2015

documenting bash function with dots and dashes inside



I asked this question on the doxygen users list, but without any luck.

It would be nice if this little feature could be added to the doxygen code to parse bash functions correctly.

Besides of this little parser problem it works like a charm!


I found a little doxygen filter for bash functions:


After a few changes, it works really fine for my sources (60_000 loc).

(Attached, plus Example file)


But there is a thing, which is really annoying, there are tons of bash-functions, which uses a dot or a minus in the function name (which is allowed in bash), for example:


function e.() {

      echo "hello"



function e-e() {

      echo "foo"



Is there a chance to add the dot and the minus for function names, so that doxygen is able to parse these names correctly?

It would be very helpful.


Thank you.


Best regards,

Alexander Elgert


Attachment (zbashrc2_test): application/octet-stream, 973 bytes
Attachment ( application/octet-stream, 9 KiB
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Timo Marjoniemi | 7 May 22:57 2015

Problem with a filter since Doxygen v1.8.8


A filter for Google Protocol buffers files I've written ( does not work from Doxygen v1.8.8 onward and so far I haven't been able to make it work. It does work with v1.8.7 and several older versions (oldest I've tested is
Has anyone else encountered such problems with custom Doxygen filters?
Any clues what could be the root cause and how to fix it?

Thanks in advance,

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Gavin Radolan | 28 Apr 01:26 2015

References and automatic numbering for figures and tables


I'm using Doxygen to create a reference manual. Input is markdown. Output is LaTeX and html. Currently using Doxygen 1.8.8.

I'm wondering if there are any plans for Doxygen to support automatic numbering of figures and tables, with referencing capability from the markdown text?

For example, behavior similar to the <at> section command's LaTeX output. But separate enumeration for figures and another separate enumeration for tables. And with the enumeration showing up in both LaTeX and html output.

Syntax might be something like this,

At the figure:

           ![fig_name](images/fig_growth_vs_time.png   "Growth rate vs time")

or maybe

          ![](images/fig_growth_vs_time.png   "Growth rate vs time")
          <at> figure fig_name "Growth rate vs time"

The first example is preferable for it's simplicity, but maybe it's difficult to have ![Caption text ] used for multiple purposes...

At the table:

<at> table tab_name Growth rate data 2009 - 2014

| Year | Growth Rate|
| 2009|         0.3245  |
In the body text:

The growth rate for the last five years is shown in \ref tab_name. As can be seen in /ref fig_name, the growth rate is logarithmic.

In the generated pdf/html:

The growth rate for the last five years is shown in Table 93: Growth rate 2009 - 2014. As can be seen in Figure 125: Growth rate vs time, the growth rate is logarithmic.

So "Figure N" and "Table M" are automatically generated and pre-pended to the caption for each figure/table in the document. And you can link to any figure or table anyplace in the doc using a /ref tag. 

I've noticed some users implement similar functionality with post-processing scripts or other "add-on" tools, such as doxynum. I could do likewise, but first, wanted to ask whether or not there are plans to have such functionality "built-in" to Doxygen - and if so, approximately when?

Kind regards,

Gavin Radolan

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johnk | 13 Apr 19:11 2015

linking to doxygen

I'd like to link to Doxygen pages from a wiki.  Currently, we do that by 
generating all the documentation in the top-level directory.  This is 
less than ideal as it results in over 48000 files in a single 
directory.  Doxygen allows for the creation of sub-directories to 
alleviate this, but the mapping doesn't seem straight-forward.

Several javascript files are generated by Doxygen that look like they 
could provide a look-up table, but I've been investigating hierarchy.js 
and have been unable to figure out how it's generated, nor how it's 
used.  Given my inability to discover how the file is generated and 
used, I'm a little reluctant to make use of it for fear it might 
disappear in some future release.  I've been poking at this for a while 
now, and haven't uncovered any answers yet.

Is there a known method for linking to the appropriate document using 
the name of the class/file/namespace/etc. as a reference?

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