Yahoo! Groups | 1 Jun 2007 23:16
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Please confirm your request to join amilo


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Yahoo! Groups | 2 Jun 2007 17:44
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Please confirm your request to join oss-research


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FDIC Bahrain | 4 Jun 2007 18:24

Fire Department Instructors Conference (FDIC Bahrain) - June eNewsletter

Yahoo! Groups | 10 Jun 2007 04:50
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Please confirm your request to join amilo


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amilo Moderator | 10 Jun 2007 04:53
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Yahoo! Groups: Welcome to amilo. Visit today!


Hello,

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amilo Moderator | 10 Jun 2007 04:53
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File - 00_Amilo_Linux_Newsletter.txt


Amilo Linux Newsletter 20070218: new kernel 2.6.20

Laptop wiki :
 <at>  http://rzr.online.fr/q/Laptop 

Amilo + Linux howto (Amilo A , D , L , M and friends) :
 <at>  http://rzr.online.fr/q/Amilo

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### CONTENTS Amilo Newsletter  <at>  http://groups.yahoo.com/group/amilo/

The major news since previous newsletter are :

* Linux Kernel 2.6.20-rt8 for AmiloA-k7 w/ RT patches

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### Kernel 2.6.20-rt8  <at>  http://rzr.online.fr/q/Kernel

Latest kernel with RT patch
I added this patch because it is requiered for Computer Aided Music, 
for curious check :
* http://rzr.online.fr/q/RT
* http://rzr.online.fr/q/TI
* http://rzr.online.fr/docs/rzr-media/RzR-20070217-Know_your_enemy_Test-ZoomG21u-Harmonizer.ogg

Built kernel :

* http://kernel.org/pub/linux/kernel/v2.6/linux-2.6.20.tar.bz2

It would be good to have a "AmiloA" optimized config files, isn't it ?

Fell free to improve mine :  <at>  http://rzr.online.fr/docs/comp/config.txt 

Debian

 \su
 wget -O- http://rzr.online.fr/docs/contribs/sources.list \
  >> /etc/apt/sources.list
 apt-get update
 apt-cache search amiloa
 apt-get install linux-2.6.20-k7-amiloa-rt

I am STILL looking for "permanent" freehosting for those debian packages

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### TODO : http://rzr.online.fr/q/AmiloA

 <at>  http://rzr.online.fr/q/Suspend
Is anyone here managed to use suspend to RAM or to Disk ?

 <at>  http://rzr.online.fr/q/Sequencer
/dev/sequencer issue

 <at>  http://rzr.online.fr/q/FrameBuffer
Can some one here help how to use directfb ? 
Please drop notes on http://rzr.online.fr/e/directfb

 <at>  http://rzr.online.fr/q/snd-usb-audio
Is anyone here use an external Audio Card for AmiloA ? 
Because I have isssue with alsa module "snd-usb-audio" 
Please signal your device tested

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### ACTION REQUIRED

You all know that amiloA lastest BIOS release is BUGGED, 
please tell this FSC using this form, just vote 
and if you (one after one, only once a month) can add a comment too 
This let them know that this thread is still hot :
 <at>  http://support.fujitsu-siemens.de/forum/viewtopic.php?p=37001

Are you sick to be forced to buy OEM software,
just join and tell what software were you forced to buy :
 <at>  http://www.frappr.com/oem/map#addyourself

I listed several actions required at http://rzr.online.fr/q/Action

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### MISC 

* 3D game working on amiloa : http://rzr.online.fr/q/GLX
* Anyone here use the AmiloA WinModem  <at>  http://rzr.online.fr/q/Modem ?
* Is is possible to get better bitrate through USB  <at>  http://rzr.online.fr/q/USB
* acpi : http://packages.qa.debian.org/a/acpidump.html
* Tvout on Radeon IGP works again on debian installing experimental version of xorg  <at>  http://rzr.online.fr/q/TvOut
* I Need help to use directbuffer  <at>  http://rzr.online.fr/q/radeonfb
* Does the modem works on kernel 2.6  <at>  http://rzr.online.fr/q/Modem
* Sound is crappy : http://rzr.online.fr/q/M5451

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### Link to put on your webpages 

<form method=GET action="http://groups.yahoo.com/subscribe/amilo">
<table cellspacing=0 cellpadding=2 border=0 ><tr><td colspan=2 align=center><b>Subscribe to amilo</b></td></tr>
<tr><td><input type=text name="user" value="enter <at> email.address" size=20></td>
<td><input type=image border=0 alt="Click here to join amilo"
 name="Click here to join amilo"src="http://groups.yahoo.com/img/ui/join.gif">
</td></tr><tr align="center"><td colspan="2"><a href="http://groups.yahoo.com/groups/amilo">
http://groups.yahoo.com/groups/amilo</a></td></tr></table></form>

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### STATUS on Amilo A  <at>  http://rzr.online.fr/q/AmiloA

* AmiloA-K7
** Sound / [M5451] : no Midi, mixer shuffled ( [ToDo] ) no line in plug  
 <at>  http://rzr.online.fr/q/M5451
** [Modem] : works on linux once intialized by windows
** [3D] : working on patched [Kernel] 2.4 and 2.6 with xorg
** [Linux] [Kernel] : 2.4 & 2.6 : ok
** AmiloA / Bios : ok need some bug fixes
 <at>  http://rzr.online.fr/q/BIOS

* AmiloA / Bios / Acpi / : TODO Lid switch, Suspend To Disk 
 <at>  http://rzr.online.fr/q/ACPI
* AmiloA / Graphics / 3D : working on kernel2.4 and 2.6
 <at>  http://rzr.online.fr/q/Radeon
* AmiloA / Kernel 2.6 / ok 
 <at>  http://rzr.online.fr/q/Kernel
* AmiloA / Ethernet : ok 
 <at>  http://rzr.online.fr/q/Ethernet
* AmiloA / RAM : ok 
 <at>  http://rzr.online.fr/q/RAM
* AmiloA / DVD+CDRW : ok now ko
 <at>  http://rzr.online.fr/q/QSI

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### QUESTIONS & TODO  <at>  http://rzr.online.fr/wiki.htm

Your contribution is welcome  <at>  http://rzr.online.fr/wiki.htm

* Can someone explain us how to get hibernate mode  ?
 <at>  http://rzr.online.fr/q/Suspend#(edit)

* Please confirm at alsa the mixer bug and MIDI
* Sound / Do you know how to fix midi playback and unshuffle mixer ? http://rzr.online.fr/q/M5451 
 <at>  http://rzr.online.fr/M5451 

* How to backup the current Bios ?
* Bios / Did you have some remarks to do on BIOS UPDATES ?
* How to backup current bios from main board to file ?
 <at>  http://rzr.online.fr/q/BIOS

* Video / xinerama ,  test X.org directfb.org
* Buses / unlock PS/2 external mouse
* Kernel / what is that MCE error ? and Serial Warning ? 
* Power Management / cpufreqd, LID switch, how to optimise this ? how to toggle screen on standby ? cpufreq ,
etc ?
* Modem / How to init w/out windows ?
* What other os are working on it (including windows beside preinstalled 
fujitsu edition of win XP home)

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### COMMUNITY NEWS  <at>  http://groups.yahoo.com/group/amilo/

* Amilo RSS Feed 
 <at>  http://rss.groups.yahoo.com/group/amilo/rss

* RzR's "RSS News" page (you can add RSS to my.yahoo.com too)
 <at>  http://rzr.online.fr/news.htm

* Amilo Group is recruting to filter new pending posts (kill spam only)
just ask me ops and check sometime 
 <at>  http://groups.yahoo.com/mygroups

* Add your specs (hardware + software) 
 <at>  http://groups.yahoo.com/group/amilo/database

* There is a Online meeting place : #laptop  <at>  irc.freenode.net
first Sundays of every month 21h00 GMT
use your favorite irc clients (like chatzilla or xchat, bitchx etc)
 <at>  irc://irc.freenode.net/laptop

* It will be helpfull to answser the surveys at :
 <at>  http://groups.yahoo.com/group/amilo/polls
 <at>  http://groups.yahoo.com/group/amilo/database

* Email delivery is set to "Special notice" only unless you change it :
 <at>  http://groups.yahoo.com/group/amilo/join
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### Previous news :

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### OFFTOPIC

If you have a homepage, and your Motivations fit :
* earn a few bucks (Volounter Work's Retribution is always welcome)
* promote LibreSoftware
* respect smart users 

See http://rzr.online.fr/lib/explorerdestroyer/00index.htm 

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
### Upcoming news :  <at>  http://rzr.online.fr/q/RecentChanges
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#
Looking for some laptop w/out windows tax
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~#

Company EYE | 11 Jun 2007 16:52
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Noll Welch | 13 Jun 2007 14:09
Picon
Favicon

First, and most blatantly, the article never mentions fees.

CAON Owns Patent To Change Global Construction!

Chan-On International Inc.
Symbol: CAON
Close: $0.75 UP

Among the 12 patents CAON recently acquired is a design for turning
industrial plastic and ash waste into wallboard to replace drywall. It
is not only a reduction in cost for developers, it is environmentally
safe and longer lasting than regular drywall. This company has the edge.
Get on CAON first thing Wednesday.

Your best option is to invest broadly in a wide array of different
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money can buy. Never; or not until you have to.
There are also some other services offered by TD that are not available
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Sometimes mortgage debt is bad debt.

If you browse the investment literature you are sure to find a lot of
advice on when to sell.

If we ever experience double digit inflation in Canada again your stocks
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There are also some other services offered by TD that are not available
through Credential, but if you just want to invest in ETFs these may not
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We  analyze RRSP asset allocations, tax strategies, and review the
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If you have any credit card debt that you carry month to month pay it
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Information      Efficient Asset Allocation: Stocks or Bonds? Your best
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It's important to withdraw using this special form, otherwise it will be
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in, and leave it there until you want it back.

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Todd Harris | 17 Jun 2007 21:50
Favicon

WormBase release WS176 now online

This is an automatic announcement that WormBase
(http://www.wormbase.org) has just been updated.  New releases occur
roughly every three weeks.

The text of the AceDB release notes, which contains highlights of the
new data is attached.  You can download the full AceDB files from:

   ftp://ftp.sanger.ac.uk/pub/wormbase/current_release/
   or
   ftp://ftp.wormbase.org/pub/wormbase/acedb/current_release

Additional information on the release, including any necessary patches or bug
fixes can be found on the WormBaseWiki:

   http://www.wormbase.org/wiki/index.php/WSWS176

new release of WormBase WS176, Wormpep176 and Wormrna176 Mon May 21 11:58:06 BST 2007

WS176 was built by Mry Ann Tuli
======================================================================

This directory includes:
i)   database.WS176.*.tar.gz    -   compressed data for new release
ii)  models.wrm.WS176           -   the latest database schema (also in above database files)
iii) CHROMOSOMES/subdir         -   contains 3 files (DNA, GFF & AGP per chromosome)
iv)  WS176-WS175.dbcomp         -   log file reporting difference from last release
v)   wormpep176.tar.gz          -   full Wormpep distribution corresponding to WS176
vi)   wormrna176.tar.gz          -   latest WormRNA release containing non-coding RNA's in the genome
vii)  confirmed_genes.WS176.gz   -   DNA sequences of all genes confirmed by EST &/or cDNA
viii) cDNA2orf.WS176.gz           -   Latest set of ORF connections to each cDNA (EST, OST, mRNA)
ix)   gene_interpolated_map_positions.WS176.gz    - Interpolated map positions for each coding/RNA gene
x)    clone_interpolated_map_positions.WS176.gz   - Interpolated map positions for each clone
xi)   best_blastp_hits.WS176.gz  - for each C. elegans WormPep protein, lists Best blastp match to
                            human, fly, yeast, C. briggsae, and SwissProt & TrEMBL proteins.
xii)  best_blastp_hits_brigprot.WS176.gz   - for each C. briggsae protein, lists Best blastp match to
                                     human, fly, yeast, C. elegans, and SwissProt & TrEMBL proteins.
xiii) geneIDs.WS176.gz   - list of all current gene identifiers with CGC & molecular names (when known)
xiv)  PCR_product2gene.WS176.gz   - Mappings between PCR products and overlapping Genes

Release notes on the web:
-------------------------
http://www.wormbase.org/wiki/index.php/Release_notes

Genome sequence composition:
----------------------------

       	WS176       	WS175      	change
----------------------------------------------
a    	32365889	32365889	  +0
c    	17779856	17779856	  +0
g    	17756016	17756016	  +0
t    	32365689	32365689	  +0
n    	0       	0       	  +0

Total	100267451	100267502	 -51
Total number of bases has decreased - please investigate ! 

Chromosomal Changes:
--------------------
There are no changes to the chromosome sequences in this release.

Gene data set (Live C.elegans genes 24101)
------------------------------------------
Molecular_info              22410 (93%)
Concise_description          4578 (19%)
Reference                    7003 (29.1%)
CGC_approved Gene name       9213 (38.2%)
RNAi_result                 19876 (82.5%)
Microarray_results          19152 (79.5%)
SAGE_transcript             20034 (83.1%)

Wormpep data set:
----------------------------

There are 20131 CDS in autoace, 23375 when counting 3244 alternate  splice forms.

The 23375 sequences contain 10,266,608 base pairs in total.

Modified entries              91
Deleted entries               77
New entries                  175
Reappeared entries             4

Net change  +102

Status of entries: Confidence level of prediction (based on the amount of transcript evidence)
-------------------------------------------------
Confirmed              7940 (34.0%)	Every base of every exon has transcription evidence (mRNA, EST etc.)
Partially_confirmed   10811 (46.3%)	Some, but not all exon bases are covered by transcript evidence
Predicted              4624 (19.8%)	No transcriptional evidence at all

Status of entries: Protein Accessions
-------------------------------------
UniProtKB/Swiss-Prot accessions   3523 (15.1%)
UniProtKB/TrEMBL accessions     19412 (83.0%)

Status of entries: Protein_ID's in EMBL
---------------------------------------
Protein_id            22935 (98.1%)

Gene <-> CDS,Transcript,Pseudogene connections (cgc-approved)
---------------------------------------------
Entries with CGC-approved Gene name   7573

GeneModel correction progress WS175 -> WS176
-----------------------------------------
Confirmed introns not in a CDS gene model;

		+---------+--------+
		| Introns | Change |
		+---------+--------+
Cambridge	|     70  |  -103  |
St Louis 	|    179  |   -33  |
		+---------+--------+

Members of known repeat families that overlap predicted exons;

		+---------+--------+
		| Repeats | Change |
		+---------+--------+
Cambridge	|      6  |     0  |
St Louis 	|      6  |     0  |
		+---------+--------+

Synchronisation with GenBank / EMBL:
------------------------------------

No synchronisation issues

There are no gaps remaining in the genome sequence
---------------
For more info mail worm <at> sanger.ac.uk
-===================================================================================-

New Data:
---------
 A set of 51,623 mass spectroscopy peptides from Gennifer Merrihew at Michael MacCoss's laboratory 
has been added to this release.  Proteins have been fragmented and the molecular weights of the 
fragments have then been used to deduce the sequence of the fragments by comparing to a database 
of C. elegans protein sequences.

 The peptides were mapped to the genome using the known positions of the peptides in the matching 
proteins and the known positions of the proteins' genes on the genome.

 This data gives confirmatory evidence of many exons and (where they span splice sites) some introns.

Genome sequence updates:
-----------------------
None

New Fixes:
----------
None

Known Problems:
---------------
None

Other Changes:
--------------
None

Proposed Changes / Forthcoming Data:
-------------------------------------
A number of genomic canonical clones are going to be updated for WS177.

F54F7   deletion  tagctcaccagcttgcacgGgaagtgaaagtcttgaaata
F28H7   deletion  aacaaaatcttgcaactagTaatgtgaaaaagtgtggact
K07A1   insertion ttctcaaatttcagtttatTggaacattacaaatatgtgt
F13G3   insertion tttttttcagacaccgttcgtttggctccgGcgcgatcaacatggtgatggttgcacaagg
R10E11  deletion  gccacctggaaatcaatcagctcctcaaaaAgaattccgaatctgcctatattctgttcta
K11H3   insertion gcattaacaacacacggaaatcgaaatggaCcacttcgttatagtcttcttcaacaacgag
F13G3   insertion ccttgtgcaaccatcaccatgttgatcgcgGcggagccaaacgaacggtgtctgaaaaaaa
Y95D11A shift-overlap with F49D11

Model Changes:
------------------------------------

-===================================================================================-

Quick installation guide for UNIX/Linux systems
-----------------------------------------------

1. Create a new directory to contain your copy of WormBase,
	e.g. /users/yourname/wormbase

2. Unpack and untar all of the database.*.tar.gz files into
	this directory. You will need approximately 2-3 Gb of disk space.

3. Obtain and install a suitable acedb binary for your system
	(available from www.acedb.org).

4. Use the acedb 'xace' program to open your database, e.g.
	type 'xace /users/yourname/wormbase' at the command prompt.

5. See the acedb website for more information about acedb and
	using xace.

____________  END _____________


Gmane