WormBase release WS128 now online
WormBase <wormbase <at> wormbase.org>
2004-08-02 18:39:55 GMT
This is an automatic announcement that WormBase
(http://www.wormbase.org) has just been updated. New releases occur
roughly every 2 weeks.
The text of the AceDB release notes, which contains highlights of the
new data is attached. You can download the full AceDB files from:
ftp://ftp.sanger.ac.uk/pub/wormbase/current_release/
New release of WormBase WS128, Wormpep128 and Wormrna128 Fri Jul 16 11:16:57 BST 2004
WS128 was built by
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This directory includes:
i) database.WS128.*.tar.gz - compressed data for new release
ii) models.wrm.WS128 - the latest database schema (also in above database files)
iii) CHROMOSOMES/subdir - contains 3 files (DNA, GFF & AGP per chromosome)
iv) WS128-WS127.dbcomp - log file reporting difference from last release
v) wormpep128.tar.gz - full Wormpep distribution corresponding to WS128
vi) wormrna128.tar.gz - latest WormRNA release containing non-coding RNA's in the genome
vii) confirmed_genes.WS128.gz - DNA sequences of all genes confirmed by EST &/or cDNA
viii) yk2orf.WS128.gz - Latest set of ORF connections to each Yuji Kohara EST clone
ix) gene_interpolated_map_positions.WS128.gz - Interpolated map positions for each coding/RNA gene
x) clone_interpolated_map_positions.WS128.gz - Interpolated map positions for each clone
xi) best_blastp_hits.WS128.gz - for each C. elegans WormPep protein, lists Best blastp match to
human, fly, yeast, C. briggsae, and SwissProt & TrEMBL proteins.
xii) best_blastp_hits_brigprot.WS128.gz - for each C. briggsae protein, lists Best blastp match to
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