20 Jan 2006 19:29
WormBase release WS152 now online
WormBase <wormbase <at> wormbase.org>
2006-01-20 18:29:34 GMT
2006-01-20 18:29:34 GMT
This is an automatic announcement that WormBase (http://www.wormbase.org) has just been updated. New releases occur roughly every three weeks. The text of the AceDB release notes, which contains highlights of the new data is attached. You can download the full AceDB files from: ftp://ftp.sanger.ac.uk/pub/wormbase/current_release/ or ftp://ftp.wormbase.org/pub/wormbase/elegans/current_release New release of WormBase WS152, Wormpep152 and Wormrna152 Mon Dec 19 11:54:06 GMT 2005 WS152 was built by Michael ====================================================================== This directory includes: i) database.WS152.*.tar.gz - compressed data for new release ii) models.wrm.WS152 - the latest database schema (also in above database files) iii) CHROMOSOMES/subdir - contains 3 files (DNA, GFF & AGP per chromosome) iv) WS152-WS151.dbcomp - log file reporting difference from last release v) wormpep152.tar.gz - full Wormpep distribution corresponding to WS152 vi) wormrna152.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS152.gz - DNA sequences of all genes confirmed by EST &/or cDNA viii) cDNA2orf.WS152.gz - Latest set of ORF connections to each cDNA (EST, OST, mRNA) ix) gene_interpolated_map_positions.WS152.gz - Interpolated map positions for each coding/RNA gene x) clone_interpolated_map_positions.WS152.gz - Interpolated map positions for each clone xi) best_blastp_hits.WS152.gz - for each C. elegans WormPep protein, lists Best blastp match to human, fly, yeast, C. briggsae, and SwissProt & TrEMBL proteins. xii) best_blastp_hits_brigprot.WS152.gz - for each C. briggsae protein, lists Best blastp match to(Continue reading)
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