5 Dec 2004 20:28
WormBase release WS135 now online
WormBase <wormbase <at> wormbase.org>
2004-12-05 19:28:27 GMT
2004-12-05 19:28:27 GMT
This is an automatic announcement that WormBase (http://www.wormbase.org) has just been updated. New releases occur roughly every 2 weeks. The text of the AceDB release notes, which contains highlights of the new data is attached. You can download the full AceDB files from: ftp://ftp.sanger.ac.uk/pub/wormbase/current_release/ New release of WormBase WS135, Wormpep135 and Wormrna135 Thu Nov 11 13:32:31 GMT 2004 WS135 was built by Paul Davis ====================================================================== This directory includes: i) database.WS135.*.tar.gz - compressed data for new release ii) models.wrm.WS135 - the latest database schema (also in above database files) iii) CHROMOSOMES/subdir - contains 3 files (DNA, GFF & AGP per chromosome) iv) WS135-WS134.dbcomp - log file reporting difference from last release v) wormpep135.tar.gz - full Wormpep distribution corresponding to WS135 vi) wormrna135.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS135.gz - DNA sequences of all genes confirmed by EST &/or cDNA viii) cDNA2orf.WS135.gz - Latest set of ORF connections to each cDNA (EST, OST, mRNA) ix) gene_interpolated_map_positions.WS135.gz - Interpolated map positions for each coding/RNA gene x) clone_interpolated_map_positions.WS135.gz - Interpolated map positions for each clone xi) best_blastp_hits.WS135.gz - for each C. elegans WormPep protein, lists Best blastp match to human, fly, yeast, C. briggsae, and SwissProt & TrEMBL proteins. xii) best_blastp_hits_brigprot.WS135.gz - for each C. briggsae protein, lists Best blastp match to human, fly, yeast, C. elegans, and SwissProt & TrEMBL proteins. xiii) geneIDs.WS135.gz - list of all current gene identifiers with CGC & molecular names (when known)(Continue reading)
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