WormBase | 13 Nov 00:38 2004

WormBase release WS134 now online

This is an automatic announcement that WormBase
(http://www.wormbase.org) has just been updated.  New releases occur
roughly every 2 weeks.

The text of the AceDB release notes, which contains highlights of the
new data is attached.  You can download the full AceDB files from:

   ftp://ftp.sanger.ac.uk/pub/wormbase/current_release/

New release of WormBase WS134, Wormpep134 and Wormrna134 Fri Oct 22 16:59:32 BST 2004

WS134 was built by Keith R. Bradnam
======================================================================

This directory includes:
i)	database.WS134.*.tar.gz    -   compressed data for new release
ii)	models.wrm.WS134           -   the latest database schema (also in above database files)
iii)	CHROMOSOMES/subdir         -   contains 3 files (DNA, GFF & AGP per chromosome)
iv)	WS134-WS133.dbcomp         -   log file reporting difference from last release
v)	wormpep134.tar.gz          -   full Wormpep distribution corresponding to WS134
vi)	wormrna134.tar.gz          -   latest WormRNA release containing non-coding RNA's in the genome
vii)	confirmed_genes.WS134.gz   -   DNA sequences of all genes confirmed by EST &/or cDNA
viii)	cDNA2orf.WS134.gz            -   Latest set of ORF connections to each cDNA (EST, OST, mRNA)
ix)	gene_interpolated_map_positions.WS134.gz    - Interpolated map positions for each coding/RNA gene
x)	clone_interpolated_map_positions.WS134.gz   - Interpolated map positions for each clone
xi)	best_blastp_hits.WS134.gz  - for each C. elegans WormPep protein, lists Best blastp match to
                            human, fly, yeast, C. briggsae, and SwissProt & TrEMBL proteins.
xii)	best_blastp_hits_brigprot.WS134.gz   - for each C. briggsae protein, lists Best blastp match to
                                     human, fly, yeast, C. elegans, and SwissProt & TrEMBL proteins.
xiii)	geneIDs.WS134.gz   - list of all current gene identifiers with CGC & molecular names (when known)
(Continue reading)


Gmane