1 Apr 2012 01:03
Re: Gbrowse installation on CentOS
What are the errors? What's in the apache log?
Same problem :(On Fri, Mar 30, 2012 at 3:41 PM, Adam Witney <awitney-VYDNT20+6pi1Qrn1Bg8BZw@public.gmane.org> wrote:
have you tried:
http://localhost/gb2/gbrowse
On 30 Mar 2012, at 17:22, Omar Darwish wrote:
> Hi Scott,
> I tried what your command via cpan, with the following,
> **Beginning interactive configuration**
> Directory for GBrowse's config and support files? [/etc/gbrowse2] /etc/gbrowse2
> Directory for GBrowse's static images & HTML files? [/var/www/html/gbrowse2] /var/www/html/gbrowse2/
> Directory for GBrowse's temporary data [/var/tmp/gbrowse2] /var/tmp/gbrowse2/
> Directory for GBrowse's sessions, uploaded tracks and other persistent data [/var/lib/gbrowse2] /var/lib/gbrowse2/
> Directory for GBrowse's example databases [/var/lib/gbrowse2/databases] /var/lib/gbrowse2/databases/
> Directory for GBrowse's CGI script executables? [/var/www/cgi-bin/gb2] /var/www/cgi-bin/gb2/
> Internet port to run demo web site on (for demo)? [8000] 8000
> Apache loadable module directory (for demo)? [/etc/httpd/modules] /etc/httpd/modules
> User account under which Apache daemon runs? [apache] apache
> Automatically update Apache config files to run GBrowse? [y] y
> Automatically update system config files to run gbrowse-slave? [y] y
>
>
> Now, I have the following directories,
> /var/www/cgi-bin/gb2 --> contains the gbrowse executables
> /var/www/html/gbrowse2 --> contains the gbrowse start page (index.html) and other files
>
> I tried,
> localhost/gbrowse2 --> wont work
> localhost/gbrowse2/index.html --> wont work
>
> I created new directory with test html page
> /var/www/html/test/test.html --> It worked when i browsed localhost/test/test.html
>
>
>
> On Thu, Mar 29, 2012 at 3:26 PM, Scott Cain <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org> wrote:
> Huh, that's interesting; I'd have thought the force in that context
> would have, you know, forced the installation. The other option is to
> use the cpan shell:
>
> sudo cpan
> cpan> force install Bio::Graphics::Browser2
> ...
> cpan> quit
>
> which absolutely should work. You don't have to (and in fact there
> isn't an established way to) uninstall GBrowse.
>
> Scott
>
>
> On Thu, Mar 29, 2012 at 3:19 PM, Omar Darwish <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org> wrote:
> > Hi Scott,
> >
> > Well, Do i need to uninstall what i have installed before i re-install? How?
> > Please see the attached output when i tried to run the command while what i
> > have installed is still there.
> >
> > Thanks,
> >
> >
> > On Thu, Mar 29, 2012 at 2:54 PM, Scott Cain <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org> wrote:
> >>
> >> Hi Omar,
> >>
> >> Well that is strange: the html and cgi files don't appear to have gone
> >> anywhere! I don't suppose you kept the transcript of the "successful"
> >> installation; I'm wondering if there were any error message about the
> >> placement of the html and cgi-bin directories and files. If not, you
> >> should run the installation again:
> >>
> >> sudo perl -MCPAN -e 'force install Bio::Graphics::Browser2'
> >>
> >> and pay attention to the items asking where to put html and cgi
> >> directories. They should go in /var/www/html and /var/www/cgi-bin
> >> respectively.
> >>
> >> Scott
> >>
> >>
> >> On Wed, Mar 28, 2012 at 5:41 PM, Omar Darwish <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
> >> wrote:
> >> > Sorry to keep bugging you with this, i really appreciate your help.
> >> > This is what i got:
> >> > /etc/gbrowse2
> >> > /etc/gbrowse2/GBrowse.conf
> >> > /etc/gbrowse2/MobyServices
> >> > /etc/gbrowse2/detail_select_menu.conf
> >> > /etc/gbrowse2/enzymes.txt
> >> > /etc/gbrowse2/languages
> >> > /etc/gbrowse2/log4perl.conf
> >> > /etc/gbrowse2/plugins
> >> > /etc/gbrowse2/pop_demo.conf
> >> > /etc/gbrowse2/slave_preload.conf
> >> > /etc/gbrowse2/submitter_plugin.conf
> >> > /etc/gbrowse2/synteny
> >> > /etc/gbrowse2/themes
> >> > /etc/gbrowse2/volvox.conf
> >> > /etc/gbrowse2/yeast_chr1+2.conf
> >> > /etc/gbrowse2/yeast_renderfarm.conf
> >> > /etc/gbrowse2/yeast_simple.conf
> >> > /etc/gbrowse2/MobyServices/GbrowseServices.PMS
> >> > /etc/gbrowse2/MobyServices/GbrowseServices.pm
> >> > /etc/gbrowse2/MobyServices/b64_encoded_gif_renderer.pm
> >> > /etc/gbrowse2/MobyServices/b64_encoded_jpeg_renderer.pm
> >> > /etc/gbrowse2/MobyServices/moby.conf
> >> > /etc/gbrowse2/MobyServices/text_formatted_renderer.pm
> >> > /etc/gbrowse2/MobyServices/text_html_renderer.pm
> >> > /etc/gbrowse2/MobyServices/text_plain_renderer.pm
> >> > /etc/gbrowse2/MobyServices/text_xml_renderer.pm
> >> > /etc/gbrowse2/languages/POSIX.pm
> >> > /etc/gbrowse2/languages/de.pm
> >> > /etc/gbrowse2/languages/en.pm
> >> > /etc/gbrowse2/languages/es.pm
> >> > /etc/gbrowse2/languages/fr.pm
> >> > /etc/gbrowse2/languages/is.pm
> >> > /etc/gbrowse2/languages/it.pm
> >> > /etc/gbrowse2/languages/ja.pm
> >> > /etc/gbrowse2/languages/ko.pm
> >> > /etc/gbrowse2/languages/nl.pm
> >> > /etc/gbrowse2/languages/pl.pm
> >> > /etc/gbrowse2/languages/ru.pm
> >> > /etc/gbrowse2/languages/zh.pm
> >> > /etc/gbrowse2/languages/zh_cn.pm
> >> > /etc/gbrowse2/plugins/AlignTwoSequences.pm
> >> > /etc/gbrowse2/plugins/Aligner.pm
> >> > /etc/gbrowse2/plugins/AttributeHiliter.pm
> >> > /etc/gbrowse2/plugins/BatchDumper.pm
> >> > /etc/gbrowse2/plugins/Blat.pm
> >> > /etc/gbrowse2/plugins/CMapDumper.pm
> >> > /etc/gbrowse2/plugins/CreateBlastDB.pm
> >> > /etc/gbrowse2/plugins/FBTableDumper.pm
> >> > /etc/gbrowse2/plugins/FastaDumper.pm
> >> > /etc/gbrowse2/plugins/FilterTest.pm
> >> > /etc/gbrowse2/plugins/GeneFinder.pm
> >> > /etc/gbrowse2/plugins/LDAPAuthenticate.pm
> >> > /etc/gbrowse2/plugins/OligoFinder.pm
> >> > /etc/gbrowse2/plugins/PamAuthenticate.pm
> >> > /etc/gbrowse2/plugins/PrimerDesigner.pm
> >> > /etc/gbrowse2/plugins/ProteinDumper.pm
> >> > /etc/gbrowse2/plugins/RandomGene.pm
> >> > /etc/gbrowse2/plugins/RestrictionAnnotator.pm
> >> > /etc/gbrowse2/plugins/SequenceDumper.pm
> >> > /etc/gbrowse2/plugins/SimpleTrackFinder.pm
> >> > /etc/gbrowse2/plugins/SinWave.pm
> >> > /etc/gbrowse2/plugins/SourceTrackFinder.pm
> >> > /etc/gbrowse2/plugins/Spectrogram.pm
> >> > /etc/gbrowse2/plugins/Submitter.pm
> >> > /etc/gbrowse2/plugins/TestAuthenticator.pm
> >> > /etc/gbrowse2/plugins/TestFinder.pm
> >> > /etc/gbrowse2/plugins/TrackDumper.pm
> >> > /etc/gbrowse2/plugins/TrackFinder.pm
> >> > /etc/gbrowse2/plugins/test.pm
> >> > /etc/gbrowse2/synteny/oryza.synconf.disabled
> >> > /etc/gbrowse2/synteny/rice_synteny.conf
> >> > /etc/gbrowse2/synteny/wild_rice_synteny.conf
> >> > /etc/gbrowse2/themes/solid_gray_colors
> >> > /etc/gbrowse2/themes/transparent_colors
> >> > /etc/gbrowse2/themes/warm_colors
> >> > /etc/httpd/conf.d/gbrowse2.conf
> >> >
> >> > /root/.cpan/build/GBrowse-2.48-27jEyE/blib/etc/httpd/conf.d/gbrowse2.conf
> >> >
> >> > /root/.cpan/build/GBrowse-2.48-EXfEDE/blib/etc/httpd/conf.d/gbrowse2.conf
> >> >
> >> > /root/.cpan/build/GBrowse-2.48-EZitTT/blib/etc/httpd/conf.d/gbrowse2.conf
> >> >
> >> > /root/.cpan/build/GBrowse-2.48-X2VOPv/blib/etc/httpd/conf.d/gbrowse2.conf
> >> >
> >> > /root/.cpan/build/GBrowse-2.48-hEDg4u/blib/etc/httpd/conf.d/gbrowse2.conf
> >> >
> >> > /root/.cpan/build/GBrowse-2.48-j8uGQI/blib/etc/httpd/conf.d/gbrowse2.conf
> >> > /var/lib/gbrowse2
> >> > /var/lib/gbrowse2/databases
> >> > /var/lib/gbrowse2/sessions
> >> > /var/lib/gbrowse2/userdata
> >> > /var/lib/gbrowse2/databases/admin_uploads
> >> > /var/lib/gbrowse2/databases/gbrowse_syn
> >> > /var/lib/gbrowse2/databases/ideograms
> >> > /var/lib/gbrowse2/databases/pop_demo
> >> > /var/lib/gbrowse2/databases/yeast_chr1+2
> >> > /var/lib/gbrowse2/databases/yeast_scaffolds
> >> > /var/lib/gbrowse2/databases/admin_uploads/README
> >> > /var/lib/gbrowse2/databases/gbrowse_syn/alignments
> >> > /var/lib/gbrowse2/databases/gbrowse_syn/rice
> >> > /var/lib/gbrowse2/databases/gbrowse_syn/wild_rice
> >> > /var/lib/gbrowse2/databases/gbrowse_syn/alignments/rice.aln.gz
> >> > /var/lib/gbrowse2/databases/gbrowse_syn/rice/rice.gff3
> >> > /var/lib/gbrowse2/databases/gbrowse_syn/wild_rice/wild_rice.gff3
> >> > /var/lib/gbrowse2/databases/ideograms/human_cytobands.gff
> >> > /var/lib/gbrowse2/databases/ideograms/mouse_cytobands.gff
> >> > /var/lib/gbrowse2/databases/ideograms/rat_cytobands.gff
> >> > /var/lib/gbrowse2/databases/pop_demo/pop_demo.gff3
> >> > /var/lib/gbrowse2/databases/yeast_chr1+2/yeast_chr1+2.gff3
> >> > /var/lib/gbrowse2/databases/yeast_scaffolds/chr1.fa
> >> > /var/lib/gbrowse2/databases/yeast_scaffolds/chr2.fa
> >> > /var/lib/gbrowse2/databases/yeast_scaffolds/chromosomes.gff3
> >> >
> >> >
> >> >
> >> > On Wed, Mar 28, 2012 at 5:38 PM, Scott Cain <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org> wrote:
> >> >>
> >> >> Omar,
> >> >>
> >> >> Are you familiar with the locate command? Run updatedb and then try
> >> >>
> >> >> locate gbrowse2
> >> >>
> >> >> to see where it went.
> >> >>
> >> >> Scott
> >> >>
> >> >>
> >> >> On Wed, Mar 28, 2012 at 5:23 PM, Omar Darwish <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
> >> >> wrote:
> >> >> > Oh No it is empty!
> >> >> >
> >> >> >
> >> >> > On Wed, Mar 28, 2012 at 5:22 PM, Scott Cain <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org>
> >> >> > wrote:
> >> >> >>
> >> >> >> Hi Omar,
> >> >> >>
> >> >> >> Is the gbrowse2 directory in /var/www/html?
> >> >> >>
> >> >> >> Scott
> >> >> >>
> >> >> >> (please leave the GBrowse list cc'ed so the debugging can be
> >> >> >> archived)
> >> >> >>
> >> >> >>
> >> >> >> On Wed, Mar 28, 2012 at 5:21 PM, Omar Darwish <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
> >> >> >> wrote:
> >> >> >> > Yes, /var/www exists and it has (html, error, cgi-bin and icons)
> >> >> >> >
> >> >> >> >
> >> >> >> > On Wed, Mar 28, 2012 at 5:11 PM, Scott Cain <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org>
> >> >> >> > wrote:
> >> >> >> >>
> >> >> >> >> Hi Omar,
> >> >> >> >>
> >> >> >> >> Well then I guessed wrong what the problem was. Does /var/www
> >> >> >> >> exist?
> >> >> >> >> Does it have an html directory, and a gbrowse2 directory in it?
> >> >> >> >>
> >> >> >> >> Scott
> >> >> >> >>
> >> >> >> >>
> >> >> >> >> On Wed, Mar 28, 2012 at 5:07 PM, Omar Darwish
> >> >> >> >> <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
> >> >> >> >> wrote:
> >> >> >> >> > Hi Scott,
> >> >> >> >> >
> >> >> >> >> > I could not find this directory /usr/local/apache ?? i can only
> >> >> >> >> > see
> >> >> >> >> > is
> >> >> >> >> > this
> >> >> >> >> > one /etc/httpd
> >> >> >> >> >
> >> >> >> >> >
> >> >> >> >> >
> >> >> >> >> > On Wed, Mar 28, 2012 at 4:48 PM, Scott Cain
> >> >> >> >> > <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org>
> >> >> >> >> > wrote:
> >> >> >> >> >>
> >> >> >> >> >> Hi Omar,
> >> >> >> >> >>
> >> >> >> >> >> I just looked back at the installation log that you sent--the
> >> >> >> >> >> installer suggested that you install in /usr/local/apache,
> >> >> >> >> >> which
> >> >> >> >> >> is
> >> >> >> >> >> where it would be if you built apache from source, which I'm
> >> >> >> >> >> guessing
> >> >> >> >> >> you didn't do. The easiest way to fix that is to "rm -rf
> >> >> >> >> >> /usr/local/apache" and force the installation of GBrowse
> >> >> >> >> >> again:
> >> >> >> >> >>
> >> >> >> >> >> sudo perl -MCPAN -e 'force install Bio::Graphics::Browser2'
> >> >> >> >> >>
> >> >> >> >> >> The reason that happened is you tried to install GBrowse
> >> >> >> >> >> before
> >> >> >> >> >> you
> >> >> >> >> >> installed apache, and when the installer didn't find the
> >> >> >> >> >> directories
> >> >> >> >> >> for the system installed apache, it assumed you must have one
> >> >> >> >> >> you
> >> >> >> >> >> installed yourself, and created /usr/local/apache and put the
> >> >> >> >> >> GBrowse
> >> >> >> >> >> files there. (A possible second explanation is that CentOS
> >> >> >> >> >> changed
> >> >> >> >> >> where it's apache directories are, but I don't think that is
> >> >> >> >> >> it
> >> >> >> >> >> since
> >> >> >> >> >> I probably would have heard about it by now.)
> >> >> >> >> >>
> >> >> >> >> >> Scott
> >> >> >> >> >>
> >> >> >> >> >>
> >> >> >> >> >> On Wed, Mar 28, 2012 at 4:26 PM, Omar Darwish
> >> >> >> >> >> <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
> >> >> >> >> >> wrote:
> >> >> >> >> >> > Thanks Scott, I guess it worked After installing perl DBI!!
> >> >> >> >> >> > To double check, i tried executing ( sudo perl -MCPAN -e
> >> >> >> >> >> > 'install
> >> >> >> >> >> > Bio::Graphics::Browser2' ) one more time, it returned the
> >> >> >> >> >> > lines
> >> >> >> >> >> > below:
> >> >> >> >> >> > CPAN: Storable loaded ok (v2.20)
> >> >> >> >> >> > Going to read '/root/.cpan/Metadata'
> >> >> >> >> >> > Database was generated on Wed, 28 Mar 2012 16:10:31 GMT
> >> >> >> >> >> > Bio::Graphics::Browser2 is up to date (2.48).
> >> >> >> >> >> >
> >> >> >> >> >> >
> >> >> >> >> >> > Apache server is running, I tried to access
> >> >> >> >> >> > (http://localhost/gbrowse2)
> >> >> >> >> >> > I
> >> >> >> >> >> > got page Not Found
> >> >> >> >> >> > Do I need to do any kind of configuration ?
> >> >> >> >> >> >
> >> >> >> >> >> > Regards
> >> >> >> >> >> >
> >> >> >> >> >> >
> >> >> >> >> >> >
> >> >> >> >> >> >
> >> >> >> >> >> > On Wed, Mar 28, 2012 at 4:11 PM, Scott Cain
> >> >> >> >> >> > <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org>
> >> >> >> >> >> > wrote:
> >> >> >> >> >> >>
> >> >> >> >> >> >> Hi Omar,
> >> >> >> >> >> >>
> >> >> >> >> >> >> While you shouldn't need (and didn't used to need) the perl
> >> >> >> >> >> >> module
> >> >> >> >> >> >> DBI
> >> >> >> >> >> >> to install GBrowse, apparently something has changed
> >> >> >> >> >> >> recently.
> >> >> >> >> >> >> If
> >> >> >> >> >> >> you
> >> >> >> >> >> >> install perl-DBI with yum things should work. In reality,
> >> >> >> >> >> >> unless
> >> >> >> >> >> >> you
> >> >> >> >> >> >> are just installing GBrowse to do the tutorial and nothing
> >> >> >> >> >> >> else,
> >> >> >> >> >> >> you're going to want DBI anyway.
> >> >> >> >> >> >>
> >> >> >> >> >> >> Scott
> >> >> >> >> >> >>
> >> >> >> >> >> >>
> >> >> >> >> >> >> On Wed, Mar 28, 2012 at 4:03 PM, Omar Darwish
> >> >> >> >> >> >> <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
> >> >> >> >> >> >> wrote:
> >> >> >> >> >> >> > Hi Scott,
> >> >> >> >> >> >> >
> >> >> >> >> >> >> > I installed the Bio::Graphics, it went fine i guess,
> >> >> >> >> >> >> > please
> >> >> >> >> >> >> > take a
> >> >> >> >> >> >> > look
> >> >> >> >> >> >> > at
> >> >> >> >> >> >> > the new attached output file
> >> >> >> >> >> >> >
> >> >> >> >> >> >> > Thanks
> >> >> >> >> >> >> >
> >> >> >> >> >> >> >
> >> >> >> >> >> >> > On Wed, Mar 28, 2012 at 3:51 PM, Scott Cain
> >> >> >> >> >> >> > <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org>
> >> >> >> >> >> >> > wrote:
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> Hi Omar,
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> Bio::Graphics isn't getting installed since GD won't
> >> >> >> >> >> >> >> install.
> >> >> >> >> >> >> >> GD
> >> >> >> >> >> >> >> won't install because you don't have the libgd headers
> >> >> >> >> >> >> >> installed.
> >> >> >> >> >> >> >> The
> >> >> >> >> >> >> >> easiest thing to do would be to use yum to install GD:
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> sudo yum install perl-GD
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> but to do that you might have to add rpmforge as a yum
> >> >> >> >> >> >> >> repository.
> >> >> >> >> >> >> >> See:
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> http://wiki.centos.org/AdditionalResources/Repositories/RPMForge
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> Scott
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> On Wed, Mar 28, 2012 at 3:30 PM, Omar Darwish
> >> >> >> >> >> >> >> <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
> >> >> >> >> >> >> >> wrote:
> >> >> >> >> >> >> >> > Hi Scott,
> >> >> >> >> >> >> >> > Please see the attached file
> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> > On Wed, Mar 28, 2012 at 3:14 PM, Scott Cain
> >> >> >> >> >> >> >> > <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org>
> >> >> >> >> >> >> >> > wrote:
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> Hi Omar,
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> Yes, if you type "script" before entering the cpan
> >> >> >> >> >> >> >> >> shell,
> >> >> >> >> >> >> >> >> everything
> >> >> >> >> >> >> >> >> you type and the responses on the screen are saved to
> >> >> >> >> >> >> >> >> a
> >> >> >> >> >> >> >> >> file.
> >> >> >> >> >> >> >> >> To
> >> >> >> >> >> >> >> >> make
> >> >> >> >> >> >> >> >> script quit, you type control-D.
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> Scott
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> On Wed, Mar 28, 2012 at 3:07 PM, Omar Darwish
> >> >> >> >> >> >> >> >> <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
> >> >> >> >> >> >> >> >> wrote:
> >> >> >> >> >> >> >> >> > Oh, I am not really sure about your question, Is
> >> >> >> >> >> >> >> >> > there
> >> >> >> >> >> >> >> >> > any
> >> >> >> >> >> >> >> >> > way
> >> >> >> >> >> >> >> >> > (command)
> >> >> >> >> >> >> >> >> > i
> >> >> >> >> >> >> >> >> > can save the installation output to a file so that
> >> >> >> >> >> >> >> >> > i
> >> >> >> >> >> >> >> >> > can
> >> >> >> >> >> >> >> >> > send
> >> >> >> >> >> >> >> >> > it
> >> >> >> >> >> >> >> >> > to
> >> >> >> >> >> >> >> >> > you
> >> >> >> >> >> >> >> >> > ?
> >> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >> > Thanks
> >> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >> > On Wed, Mar 28, 2012 at 3:03 PM, Scott Cain
> >> >> >> >> >> >> >> >> > <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org>
> >> >> >> >> >> >> >> >> > wrote:
> >> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> >> Hi Omar,
> >> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> >> That is a pretty massive failure--it looks like
> >> >> >> >> >> >> >> >> >> all
> >> >> >> >> >> >> >> >> >> of
> >> >> >> >> >> >> >> >> >> the
> >> >> >> >> >> >> >> >> >> tests
> >> >> >> >> >> >> >> >> >> failed to even run. Did the prerequisites
> >> >> >> >> >> >> >> >> >> installed
> >> >> >> >> >> >> >> >> >> with
> >> >> >> >> >> >> >> >> >> the
> >> >> >> >> >> >> >> >> >> cpan
> >> >> >> >> >> >> >> >> >> shell install properly?
> >> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> >> Scott
> >> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> >> On Wed, Mar 28, 2012 at 2:59 PM, Omar Darwish
> >> >> >> >> >> >> >> >> >> <odarwish83-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
> >> >> >> >> >> >> >> >> >> wrote:
> >> >> >> >> >> >> >> >> >> > Below the last lines i got from the Installation
> >> >> >> >> >> >> >> >> >> > process,
> >> >> >> >> >> >> >> >> >> > I
> >> >> >> >> >> >> >> >> >> > am
> >> >> >> >> >> >> >> >> >> > not
> >> >> >> >> >> >> >> >> >> > sure
> >> >> >> >> >> >> >> >> >> > if
> >> >> >> >> >> >> >> >> >> > they can help:
> >> >> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >> >> > Test Summary Report
> >> >> >> >> >> >> >> >> >> > -------------------
> >> >> >> >> >> >> >> >> >> > t/00.compile.t (Wstat: 4352 Tests: 77
> >> >> >> >> >> >> >> >> >> > Failed:
> >> >> >> >> >> >> >> >> >> > 17)
> >> >> >> >> >> >> >> >> >> > Failed tests: 1, 3, 5, 7, 10, 12, 14, 16-17,
> >> >> >> >> >> >> >> >> >> > 30,
> >> >> >> >> >> >> >> >> >> > 32,
> >> >> >> >> >> >> >> >> >> > 34
> >> >> >> >> >> >> >> >> >> > 36, 40, 42, 47, 76
> >> >> >> >> >> >> >> >> >> > Non-zero exit status: 17
> >> >> >> >> >> >> >> >> >> > t/02.rearchitecture.t (Wstat: 512 Tests: 0
> >> >> >> >> >> >> >> >> >> > Failed:
> >> >> >> >> >> >> >> >> >> > 0)
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> >> >> >> >> >> >> >> >> >> Ontario Institute for Cancer Research
> >> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >> > --
> >> >> >> >> >> >> >> >> > Regards,
> >> >> >> >> >> >> >> >> > Omar
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >> --
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> >>
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> >> >> >> >> >> >> >> >> Ontario Institute for Cancer Research
> >> >> >> >> >> >> >> >
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> >> >> >> >> >> >> >> >
> >> >> >> >> >> >> >> >
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> >> >> >> >> >> >> >> > Regards,
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> >> >> >> >> >> >> >>
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> >> >> >> >> >> >> >> --
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >>
> >> >> >> >> >> >> >> ------------------------------------------------------------------------
> >> >> >> >> >> >> >> Scott Cain, Ph. D.
> >> >> >> >> >> >> >> scott
> >> >> >> >> >> >> >> at
> >> >> >> >> >> >> >> scottcain
> >> >> >> >> >> >> >> dot net
> >> >> >> >> >> >> >> GMOD Coordinator (http://gmod.org/)
> >> >> >> >> >> >> >> 216-392-3087
> >> >> >> >> >> >> >> Ontario Institute for Cancer Research
> >> >> >> >> >> >> >
> >> >> >> >> >> >> >
> >> >> >> >> >> >> >
> >> >> >> >> >> >> >
> >> >> >> >> >> >> > --
> >> >> >> >> >> >> > Regards,
> >> >> >> >> >> >> > Omar
> >> >> >> >> >> >>
> >> >> >> >> >> >>
> >> >> >> >> >> >>
> >> >> >> >> >> >> --
> >> >> >> >> >> >>
> >> >> >> >> >> >>
> >> >> >> >> >> >>
> >> >> >> >> >> >>
> >> >> >> >> >> >>
> >> >> >> >> >> >> ------------------------------------------------------------------------
> >> >> >> >> >> >> Scott Cain, Ph. D. scott
> >> >> >> >> >> >> at
> >> >> >> >> >> >> scottcain
> >> >> >> >> >> >> dot net
> >> >> >> >> >> >> GMOD Coordinator (http://gmod.org/)
> >> >> >> >> >> >> 216-392-3087
> >> >> >> >> >> >> Ontario Institute for Cancer Research
> >> >> >> >> >> >
> >> >> >> >> >> >
> >> >> >> >> >> >
> >> >> >> >> >> >
> >> >> >> >> >> > --
> >> >> >> >> >> > Regards,
> >> >> >> >> >> > Omar
> >> >> >> >> >>
> >> >> >> >> >>
> >> >> >> >> >>
> >> >> >> >> >> --
> >> >> >> >> >>
> >> >> >> >> >>
> >> >> >> >> >>
> >> >> >> >> >>
> >> >> >> >> >> ------------------------------------------------------------------------
> >> >> >> >> >> Scott Cain, Ph. D. scott at
> >> >> >> >> >> scottcain
> >> >> >> >> >> dot net
> >> >> >> >> >> GMOD Coordinator (http://gmod.org/)
> >> >> >> >> >> 216-392-3087
> >> >> >> >> >> Ontario Institute for Cancer Research
> >> >> >> >> >
> >> >> >> >> >
> >> >> >> >> >
> >> >> >> >> >
> >> >> >> >> > --
> >> >> >> >> > Regards,
> >> >> >> >> > Omar
> >> >> >> >>
> >> >> >> >>
> >> >> >> >>
> >> >> >> >> --
> >> >> >> >>
> >> >> >> >>
> >> >> >> >>
> >> >> >> >> ------------------------------------------------------------------------
> >> >> >> >> Scott Cain, Ph. D. scott at
> >> >> >> >> scottcain
> >> >> >> >> dot net
> >> >> >> >> GMOD Coordinator (http://gmod.org/)
> >> >> >> >> 216-392-3087
> >> >> >> >> Ontario Institute for Cancer Research
> >> >> >> >
> >> >> >> >
> >> >> >> >
> >> >> >> >
> >> >> >> > --
> >> >> >> > Regards,
> >> >> >> > Omar
> >> >> >>
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> >> >> >> ------------------------------------------------------------------------
> >> >> >> Scott Cain, Ph. D. scott at
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> >> >> >> GMOD Coordinator (http://gmod.org/) 216-392-3087
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> >> >>
> >> >>
> >> >>
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> >> >> ------------------------------------------------------------------------
> >> >> Scott Cain, Ph. D. scott at scottcain
> >> >> dot net
> >> >> GMOD Coordinator (http://gmod.org/) 216-392-3087
> >> >> Ontario Institute for Cancer Research
> >> >
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> >> >
> >> >
> >> > --
> >> > Regards,
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> >>
> >>
> >>
> >> --
> >> ------------------------------------------------------------------------
> >> Scott Cain, Ph. D. scott at scottcain
> >> dot net
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> >> Ontario Institute for Cancer Research
> >
> >
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>
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