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Fang, Yaping | 2 Aug 2011 16:32
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help on GBrowse-2.39 internal server error

Dear all,

    I am new to GBrowse-2.39. I installed the GBrowse-2.39 in linux OS as following procedures:

(1) perl Build.PL --install_base=/var/www/html/soumen/gbrowse
(2) ./Build distmeta
(3)  ./Build test
(4)  ./Build config
(5)  ./Build demo
(6)  ./Build install

After I install it, I can go to the http://localhost/. But I can not go further. The are error like this:

The requested URL /cgi-bin/gbrowse/yeast was not found on this server.

I also do as the guider of tutor to volvox configuration in tutorial.html.

But it is also the same error.

Could anyone help me please? Thank you for your time

Ypfang

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Scott Cain | 2 Aug 2011 16:58
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Re: help on GBrowse-2.39 internal server error

Hi Ypfang,

What happens if you go to http://localhost/gbrowse or
http://localhost/gbrowse2?  There should be links to yeast demo
databases.  Do those work?  A typical GBrowse2 link would look like
this:

  http://localhost/cgi-bin/gb2/gbrowse/yeast

Scott

On Tue, Aug 2, 2011 at 10:32 AM, Fang, Yaping <ypfang@...> wrote:
> Dear all,
>
>    I am new to GBrowse-2.39. I installed the GBrowse-2.39 in linux OS as following procedures:
>
> (1) perl Build.PL --install_base=/var/www/html/soumen/gbrowse
> (2) ./Build distmeta
> (3)  ./Build test
> (4)  ./Build config
> (5)  ./Build demo
> (6)  ./Build install
>
>
>
> After I install it, I can go to the http://localhost/. But I can not go further. The are error like this:
>
>
>
> The requested URL /cgi-bin/gbrowse/yeast was not found on this server.
(Continue reading)

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Scott Cain | 2 Aug 2011 17:47
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Re: help on GBrowse-2.39 internal server error

Hi Ypfang,

Please keep correspondence on the mailing list.

I suspect when you set --install_base=/var/www/html/soumen/gbrowse,
everything went into that directory, including perl libraries and cgi
scripts.  Please take a look in that directory and tell us what you
see.

Of course, the easiest way to install GBrowse is to not set any flags
during the installation process and accept the defaults, which is a
reasonable thing to do unless you have a need to do something else.  I
suspect your apache config may need tweaking to get your current
installation running.

Scott

On Tue, Aug 2, 2011 at 11:09 AM, Fang, Yaping <ypfang@...> wrote:
> Dear Scott,
>      It does not work. I install gbrowse2.39 several times but it is the same serror. So I am worried
something is wrong.
> Could you tell me my procedure is correct or not? If not, can you give a specific procedure to install it
(Just the command and configuration directory need). Thank you very much!
>
> Best All.
>
>
> Ypfang
> ________________________________________
> From: Scott Cain [scott@...]
(Continue reading)

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Fang, Yaping | 2 Aug 2011 18:37
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Re: help on GBrowse-2.39 internal server error

Dear all,
    Thanks Scott first.  I have sucessfully re-install Gbrowse2.39. But the demo files
http://localhost/cgi-bin/gbrowse/yeast/ could not show the pictures.
Anyone can help me! Thank you!

Best all.

Ypfang

________________________________________
From: Scott Cain [scott@...]
Sent: Tuesday, August 02, 2011 10:47 AM
To: Fang, Yaping
Cc: Gbrowse (E-mail)
Subject: Re: [Gmod-gbrowse] help on GBrowse-2.39 internal server error

Hi Ypfang,

Please keep correspondence on the mailing list.

I suspect when you set --install_base=/var/www/html/soumen/gbrowse,
everything went into that directory, including perl libraries and cgi
scripts.  Please take a look in that directory and tell us what you
see.

Of course, the easiest way to install GBrowse is to not set any flags
during the installation process and accept the defaults, which is a
reasonable thing to do unless you have a need to do something else.  I
suspect your apache config may need tweaking to get your current
installation running.
(Continue reading)

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Scott Cain | 2 Aug 2011 18:41
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Re: help on GBrowse-2.39 internal server error

Hi Ypfang,

When you say you reinstalled it, what did you do?  As I wrote before,
the typical url for gbrowse2 would be

  http://localhost/cgi-bin/gb2/gbrowse/yeast

what do you see when you go to http://localhost/gbrowse2?  What if you
click on the links for the sample databases?  When you say it "could
not show the pictures", what does that mean?  Do you get text but all
of the images are missing?  Or that you get a blank page? Or that you
get a 500 error?  What does your apache log say?

Scott

On Tue, Aug 2, 2011 at 12:37 PM, Fang, Yaping <ypfang@...> wrote:
> Dear all,
>    Thanks Scott first.  I have sucessfully re-install Gbrowse2.39. But the demo files
http://localhost/cgi-bin/gbrowse/yeast/ could not show the pictures.
> Anyone can help me! Thank you!
>
> Best all.
>
> Ypfang
>
> ________________________________________
> From: Scott Cain [scott@...]
> Sent: Tuesday, August 02, 2011 10:47 AM
> To: Fang, Yaping
> Cc: Gbrowse (E-mail)
(Continue reading)

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Fang, Yaping | 2 Aug 2011 18:57
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Re: help on GBrowse-2.39 internal server error

Dear Scott Cain,
    I just do it as previous what I do but let any setting is default. Now it works. But i can only get text but all
of the images are missing. The apache log error is /usr/local/apache/htdocs/.htaccess: AuthName not
allowed here, referer: http://shark.abl.ku.edu/cgi-bin/gbrowse/yeast/
Thank you for your time!

Best!

Ypfang

________________________________________
From: Scott Cain [scott@...]
Sent: Tuesday, August 02, 2011 11:41 AM
To: Fang, Yaping
Cc: gmod-gbrowse@...
Subject: Re: [Gmod-gbrowse] help on GBrowse-2.39 internal server error

Hi Ypfang,

When you say you reinstalled it, what did you do?  As I wrote before,
the typical url for gbrowse2 would be

  http://localhost/cgi-bin/gb2/gbrowse/yeast

what do you see when you go to http://localhost/gbrowse2?  What if you
click on the links for the sample databases?  When you say it "could
not show the pictures", what does that mean?  Do you get text but all
of the images are missing?  Or that you get a blank page? Or that you
get a 500 error?  What does your apache log say?
(Continue reading)

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Scott Cain | 2 Aug 2011 19:21
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Re: help on GBrowse-2.39 internal server error

Hi Ypfang,

It looks like your system got messed up on failed installations
before.  I assume you are not trying to use an apache webserver that
you built from source, right?  When you do that, it goes in
/usr/local/apache as opposed to the system default locations for web
files.  I suspect that at one point, the GBrowse installer didn't know
where to put some files and put them in /usr/local/apache.  The
problem is, once that directory exists, subsequent attempts to install
GBrowse will also use that directory, because the installer assumes
that if you built apache from source, you must want to use it.

So, again assuming you do not have an apache that you've built from
source, delete the /usr/local/apache directory, and try reinstall
GBrowse (again).

Scott

On Tue, Aug 2, 2011 at 12:57 PM, Fang, Yaping <ypfang@...> wrote:
> Dear Scott Cain,
>    I just do it as previous what I do but let any setting is default. Now it works. But i can only get text but all
> of the images are missing. The apache log error is /usr/local/apache/htdocs/.htaccess: AuthName not
allowed here, referer: http://shark.abl.ku.edu/cgi-bin/gbrowse/yeast/
> Thank you for your time!
>
> Best!
>
> Ypfang
>
> ________________________________________
(Continue reading)

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James Lewis | 3 Aug 2011 21:07
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Re: Gbrowse ./Build test errors

Hi again,


Thanks to everyone who responded before! I tried adjusting the ownership settings for the alternate directories (which seemed to be the correct ones as suggested) and this still didn't stop the 403 error. I am not very experienced with apache or sys admin stuff, so I ran out of ideas on what to try next. Any suggestions? Would it be worth trying to unistall Gbrowse and reinstall in case I accidentally did something wrong in this process? Is it possible to uninstall?

Thanks,

- James

On Mon, Jul 25, 2011 at 12:19 AM, Martin Mokrejs <mmokrejs <at> fold.natur.cuni.cz> wrote:
I think that would be great, Lincoln.
Martin

Lincoln Stein wrote:
> You are free to select your favorite location for the temp directory at any time during or after installation. Right now the installer asks File::Spec for the tmp directory, but I can change that to /var/tmp if the filesystem exists.
>
> Lincoln
>
> On Fri, Jul 22, 2011 at 3:31 AM, Martin Mokrejs <mmokrejs-08dBlVkRsZX/ITNpETfbUg@public.gmane.orgni.cz <mailto:mmokrejs <at> fold.natur.cuni.cz>> wrote:
>
>     Hi,
>
>     CHANDAN SINGH wrote:
>     > Hi James
>     >
>     > The temp directory is now /tmp/gbrowse2 (look in Gbrowse.conf) and
>     > normally I do a ls -l in /var/www or any directory within to look for
>     > an unusual name for webserver.
>
>     That is unfortunate. /tmp is typically housed on a filesystem tuned for
>     "mostly reading" whereas /var is placed on a filesystem which is tuned
>     to provide good write performance. Not only that, users are expected to
>     write their crap into /var/tmp which is for that reason huge. In contrast,
>     the /tmp is placed on a small filesystem. When user fills up /tmp typically
>     all services on the machine are blocked. In contrast, when the /var/tmp
>     is filled up the server-side stuff should work on.
>
>     Just my 2c.
>     Martin
>
>     >
>     > Regards
>     > Chandan
>     >
>     >
>     > On Fri, Jul 22, 2011 at 2:27 AM, James Lewis <jjlewis-sXc7qaQca9o@public.gmane.org <mailto:jjlewis-sXc7qaQca9o@public.gmane.org>> wrote:
>     >> Hi,
>     >> Due to problems with our initial server I am reinstalling Gbrowse on a new
>     >> machine, and I came across the same 403 error as before, but this time I
>     >> don't have a /var/tmp/gbrowse2/ directory. All of /var/tmp/ is empty. I
>     >> installed gbrowse 2.39 according to the instructions on the sourceforge page
>     >> after the CPAN installation failed, and the installation seemed to work fine
>     >> (no error messages after I installed a couple additional pre-reqs). Any
>     >> suggestions on how to fix the 403 error?
>     >> Also, how do I find out the user:group my webserver runs under?
>     >> Thanks,
>     >> - James
>     >>
>     >> On Fri, Apr 8, 2011 at 10:46 AM, Olen Vance Sluder Jr <olen-HInyCGIudOg@public.gmane.org <mailto:olen-HInyCGIudOg@public.gmane.org>> wrote:
>     >>>
>     >>> Looks like an ownership issue on /var/tmp/gbrowse2/sessions. Make sure
>     >>> whatever user:group that your web server runs under owns that directory,
>     >>> maybe even from gbrowse2 down:
>     >>>
>     >>> sudo chown -R apache:apache /var/tmp/gbrowse2/sessions
>     >>> -or-
>     >>> sudo chown -R apache:apache /var/tmp/gbrowse2
>     >>>
>     >>> Substitute the correct user:group in that command. Alternately, if you
>     >>> don't want to change the ownership, you will have to make that directory
>     >>> world writeable, which is a security hole, but no big deal if it's not a
>     >>> public web server:
>     >>>
>     >>> sudo chmod -R o+w /var/tmp/gbrowse2/sessions
>     >>> -or-
>     >>> sudo chmod -R o+w /var/tmp/gbrowse2
>     >>>
>     >>> --
>     >>> Olen
>     >>>
>     >>> On Fri, Apr 8, 2011 at 12:31 PM, James Lewis <jjlewis-sXc7qaQca9o@public.gmane.org <mailto:jjlewis-sXc7qaQca9o@public.gmane.org>> wrote:
>     >>>>
>     >>>> Hi Scott,
>     >>>> Thanks for the fast response! I was missing Digest::SHA, but the 500
>     >>>> error still pops up (though I did briefly see the yeast example, which is
>     >>>> good). A larger chunk of the error.log gives:
>     >>>> [Fri Apr 08 09:16:42 2011] [error] [client ***.***.***.***] couldn't
>     >>>> create lock file '/var/tmp/gbrowse2/sessions/cgisess.db.lck': Permission
>     >>>> denied at /usr/local/share/perl/5.8.8/CGI/Session/Driver/db_file.pm <http://db_file.pm> line
>     >>>> 98., referer: http://fake.address/gbrowse2/
>     >>>> [Fri Apr 08 09:16:42 2011] [error] [client ***.***.***.***] Premature end
>     >>>> of script headers: gbrowse, referer: http://fake.address/gbrowse2/
>     >>>> [Fri Apr 08 09:16:42 2011] [error] [client ***.***.***.***] File does not
>     >>>> exist: /var/www/favicon.ico
>     >>>> [Fri Apr 08 09:16:45 2011] [error] [client ***.***.***.***] File does not
>     >>>> exist: /var/www/favicon.ico
>     >>>> [Fri Apr 08 09:23:24 2011] [error] [client ***.***.***.***] File does not
>     >>>> exist: /var/www/favicon.ico
>     >>>> [Fri Apr 08 09:23:29 2011] [error] [client ***.***.***.***] File does not
>     >>>> exist: /var/www/robots.txt
>     >>>> I looked at db_file.pm <http://db_file.pm>, is this a database access problem? Again, any
>     >>>> help is appreciated!
>     >>>> - James
>     >>>>
>     >>>> On Fri, Apr 8, 2011 at 6:25 AM, Scott Cain <scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org <mailto:scott-XkniDE3L5z0cWVvVuXF20w@public.gmane.org>> wrote:
>     >>>>>
>     >>>>> Hi James,
>     >>>>>
>     >>>>> The perl module Digest::SHA is a required prerequisite.  The GBrowse
>     >>>>> installer should have complained when you ran perl Build.PL that it
>     >>>>> was missing.  If you'd used the cpan shell to install GBrowse, it
>     >>>>> would have installed it for you automatically, as well as any other
>     >>>>> missing prerequisites.
>     >>>>>
>     >>>>> About the apache error log: there are probably one or more lines just
>     >>>>> before the ones you copied that say more precisely why you got the 500
>     >>>>> error.
>     >>>>>
>     >>>>> Scott
>     >>>>>
>     >>>>>
>     >>>>> On Fri, Apr 8, 2011 at 2:03 AM, James Lewis <jjlewis-sXc7qaQca9o@public.gmane.org <mailto:jjlewis-sXc7qaQca9o@public.gmane.org>> wrote:
>     >>>>>> Hi,
>     >>>>>> I am trying to set up GBrowse and when I run ./Build test I get the
>     >>>>>> following:
>     >>>>>> t/00.compile.t ............ ok
>     >>>>>> t/01.yeast.t .............. ok
>     >>>>>> t/02.rearchitecture.t ..... ok
>     >>>>>> t/03.render.t ............. Can't locate Digest/SHA.pm in <at> INC ( <at> INC
>     >>>>>> contains: /home/website/downloads/GBrowse-2.26/t/../lib t
>     >>>>>> /home/website/downloads/GBrowse-2.26/t/testdata
>     >>>>>> /home/website/downloads/GBrowse-2.26/blib/lib
>     >>>>>> /home/website/downloads/GBrowse-2.26/blib/arch
>     >>>>>> /home/website/downloads/GBrowse-2.26/install_util install_util
>     >>>>>> /etc/perl
>     >>>>>> /usr/local/lib/perl/5.8.8 /usr/local/share/perl/5.8.8 /usr/lib/perl5
>     >>>>>> /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8
>     >>>>>> /usr/local/lib/site_perl .) at
>     >>>>>>
>     >>>>>> /home/website/downloads/GBrowse-2.26/t/../lib/Bio/Graphics/Browser2/UserDB.pm
>     >>>>>> line 8, <DATA> line 192.
>     >>>>>> .... (a lot of failed messages along similar lines) ...then
>     >>>>>> Compilation failed in require at t/06.featuresearch.t line 41, <DATA>
>     >>>>>> line
>     >>>>>> 192.
>     >>>>>> BEGIN failed--compilation aborted at t/06.featuresearch.t line 41,
>     >>>>>> <DATA>
>     >>>>>> line 192.
>     >>>>>> t/06.featuresearch.t ...... Dubious, test returned 2 (wstat 512,
>     >>>>>> 0x200)
>     >>>>>> Failed 26/26 subtests
>     >>>>>> t/07.karyotype.t .......... ok
>     >>>>>> t/08.calign.t ............. ok
>     >>>>>> Test Summary Report
>     >>>>>> -------------------
>     >>>>>> t/03.render.t           (Wstat: 512 Tests: 01 Failed: 0)
>     >>>>>>   Non-zero exit status: 2
>     >>>>>>   Parse errors: Bad plan.  You planned 150 tests but ran 0.
>     >>>>>> t/04.remoteserver.t     (Wstat: 512 Tests: 0 Failed: 0)
>     >>>>>>   Non-zero exit status: 2
>     >>>>>>   Parse errors: Bad plan.  You planned 43 tests but ran 0.
>     >>>>>> t/05.deferredrendering.t (Wstat: 512 Tests: 0 Failed: 0)
>     >>>>>>   Non-zero exit status: 2
>     >>>>>>   Parse errors: Bad plan.  You planned 19 tests but ran 0.
>     >>>>>> t/06.featuresearch.t    (Wstat: 512 Tests: 0 Failed: 0)
>     >>>>>>   Non-zero exit status: 2
>     >>>>>>   Parse errors: Bad plan.  You planned 26 tests but ran 0.
>     >>>>>> Files=9, Tests=184,  9 wallclock secs ( 0.07 usr  0.04 sys +  7.11
>     >>>>>> cusr
>     >>>>>>  0.92 csys =  8.14 CPU)
>     >>>>>> Result: FAIL
>     >>>>>> Failed 4/9 test programs. 0/184 subtests failed.
>     >>>>>> I have no idea  what is wrong here. I tried an install anyway to see
>     >>>>>> what
>     >>>>>> happens, and I get to the "Welcome to the Generic Genome Browser"
>     >>>>>> page, but
>     >>>>>> none of the links work...they all give me an internal server error.
>     >>>>>> Any ideas what might be wrong, and (hopefully!) how to fix it?
>     >>>>>> Thanks in advance,
>     >>>>>> - James
>     >>>>>> PS: I checked the error.log file in /var/log/apache2/ and I am getting
>     >>>>>> a lot
>     >>>>>> of:
>     >>>>>> [Thu Apr 07 22:13:00 2011] [error] [client ***.***.***.***] BEGIN
>     >>>>>> failed--compilation aborted at /usr/lib/cgi-bin/gb2/gbrowse line 12,
>     >>>>>> <DATA>
>     >>>>>> line 192., referer: http://fake.address/gbrowse2/
>     >>>>>> [Thu Apr 07 22:13:00 2011] [error] [client ***.***.***.***] Premature
>     >>>>>> end of
>     >>>>>> script headers: gbrowse, referer: http://fake.address/gbrowse2/
>     >>>>>>
>     >>>>>>
>     >>>>>> ------------------------------------------------------------------------------
>     >>>>>> Xperia(TM) PLAY
>     >>>>>> It's a major breakthrough. An authentic gaming
>     >>>>>> smartphone on the nation's most reliable network.
>     >>>>>> And it wants your games.
>     >>>>>> http://p.sf.net/sfu/verizon-sfdev
>     >>>>>> _______________________________________________
>     >>>>>> Gmod-gbrowse mailing list
>     >>>>>> Gmod-gbrowse-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org <mailto:Gmod-gbrowse <at> lists.sourceforge.net>
>     >>>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>     >>>>>>
>     >>>>>>
>     >>>>>
>     >>>>>
>     >>>>>
>     >>>>> --
>     >>>>> ------------------------------------------------------------------------
>     >>>>> Scott Cain, Ph. D.                                   scott at scottcain
>     >>>>> dot net
>     >>>>> GMOD Coordinator (http://gmod.org/)                     216-392-3087 <tel:216-392-3087>
>     >>>>> Ontario Institute for Cancer Research
>     >>>>>
>     >>>>
>     >>>>
>     >>>>
>     >>>> ------------------------------------------------------------------------------
>     >>>> Xperia(TM) PLAY
>     >>>> It's a major breakthrough. An authentic gaming
>     >>>> smartphone on the nation's most reliable network.
>     >>>> And it wants your games.
>     >>>> http://p.sf.net/sfu/verizon-sfdev
>     >>>> _______________________________________________
>     >>>> Gmod-gbrowse mailing list
>     >>>> Gmod-gbrowse-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org <mailto:Gmod-gbrowse-5NWGOfrQmneRv+LV9MX5uuRhgaa4a2kL@public.gmane.orgnet>
>     >>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>     >>>>
>     >>>
>     >>
>     >>
>     >> ------------------------------------------------------------------------------
>     >> 5 Ways to Improve & Secure Unified Communications
>     >> Unified Communications promises greater efficiencies for business. UC can
>     >> improve internal communications as well as offer faster, more efficient ways
>     >> to interact with customers and streamline customer service. Learn more!
>     >> http://www.accelacomm.com/jaw/sfnl/114/51426253/
>     >> _______________________________________________
>     >> Gmod-gbrowse mailing list
>     >> Gmod-gbrowse-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org <mailto:Gmod-gbrowse-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org>
>     >> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>     >>
>     >>
>     >
>     > ------------------------------------------------------------------------------
>     > 10 Tips for Better Web Security
>     > Learn 10 ways to better secure your business today. Topics covered include:
>     > Web security, SSL, hacker attacks & Denial of Service (DoS), private keys,
>     > security Microsoft Exchange, secure Instant Messaging, and much more.
>     > http://www.accelacomm.com/jaw/sfnl/114/51426210/
>     > _______________________________________________
>     > Gmod-gbrowse mailing list
>     > Gmod-gbrowse-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org <mailto:Gmod-gbrowse-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org>
>     > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>     >
>     >
>
>     ------------------------------------------------------------------------------
>     10 Tips for Better Web Security
>     Learn 10 ways to better secure your business today. Topics covered include:
>     Web security, SSL, hacker attacks & Denial of Service (DoS), private keys,
>     security Microsoft Exchange, secure Instant Messaging, and much more.
>     http://www.accelacomm.com/jaw/sfnl/114/51426210/
>     _______________________________________________
>     Gmod-gbrowse mailing list
>     Gmod-gbrowse-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org <mailto:Gmod-gbrowse-5NWGOfrQmneRv+LV9MX5uipxlwaOVQ5f@public.gmane.org>
>     https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>
>
>
>
> --
> Lincoln D. Stein
> Director, Informatics and Biocomputing Platform
> Ontario Institute for Cancer Research
> 101 College St., Suite 800
> Toronto, ON, Canada M5G0A3
> 416 673-8514
> Assistant: Renata Musa <Renata.Musa-O2sQSXo6EZOw5LPnMra/2Q@public.gmane.org <mailto:Renata.Musa-O2sQSXo6EZOw5LPnMra/2Q@public.gmane.org>>

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Dan Bolser | 4 Aug 2011 17:17
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Latest stable GBrowse release?

Hi, git seems to show release-2_21 as the latest stable release (if
I'm reading the list of branches correctly). Is that right?

Cheers,
Dan.

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Dan Bolser | 4 Aug 2011 18:14
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Re: Latest stable GBrowse release?

git branch -r gives the following:

  origin/HEAD -> origin/master
  origin/berkeley-gadfly
  origin/bigwig_gff_prep
  origin/branch-1_47
  origin/cnvandev
  origin/development
  origin/gbrowse-session
  origin/gbrowse-session-template
  origin/gbrowse-template-branch
  origin/idavies_gbrowse-common_branch_20090615
  origin/idavies_gbrowse_common_base_20090617
  origin/lstein
  origin/master
  origin/nliles_gbrowse_circular
  origin/package-tools
  origin/postgres_gbrowse_syn_load_alignments_msa
  origin/reference-gbrowse-template
  origin/release-2_09
  origin/release-2_17-bugfixes
  origin/release-2_21
  origin/release_1_62
  origin/release_1_62-bugfixes
  origin/sonu2
  origin/sonudev2
  origin/sonudev3
  origin/sonuipaddev
  origin/stable
  origin/syn_2x
  origin/syn_2x_modules

Which one of those is 2.39?

Ahh... I see a tag called release-2_39. That must be what I'm after.

Cheers,
Dan.

On 4 August 2011 17:00, Scott Cain <scott@...> wrote:
> Hi Dan,
>
> The most recent release is 2.39. I'm no git guru (and I'm on my phone), so I
> don't know how to interpret what you're seeing. There is no such thing as an
> older "stable" release :-)
>
> Scott
>
> Sent from my iPhone
>
> On Aug 4, 2011, at 11:17 AM, Dan Bolser <dan.bolser@...> wrote:
>
>> Hi, git seems to show release-2_21 as the latest stable release (if
>> I'm reading the list of branches correctly). Is that right?
>>
>> Cheers,
>> Dan.
>>
>>
>> ------------------------------------------------------------------------------
>> BlackBerry&reg; DevCon Americas, Oct. 18-20, San Francisco, CA
>> The must-attend event for mobile developers. Connect with experts.
>> Get tools for creating Super Apps. See the latest technologies.
>> Sessions, hands-on labs, demos & much more. Register early & save!
>> http://p.sf.net/sfu/rim-blackberry-1
>> _______________________________________________
>> Gmod-gbrowse mailing list
>> Gmod-gbrowse@...
>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>

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