Re: [BioMart Users] retrieval of fasta sequence
Junjun Zhang <Junjun.Zhang <at> oicr.on.ca>
2011-09-01 19:32:38 GMT
I guess Parul tries to achieve that in his BioMart 0.8 server.
At this time, it is not supported if the sequence result is produced by a
normal data query, ie, sequence is kept in database using a varchar
column. We will consider supporting this in future releases.
We do have a specialized tool that provides access to various of sequences
art_63_config). However, this is not current officially supported and is
not recommended for external use.
On 11-09-01 3:19 PM, "Elena Rivkin" <Elena.Rivkin <at> oicr.on.ca> wrote:
>It seems that the sequence in your link is already in FASTA format
>Elena Rivkin, PhD
>Outreach and Training Coordinator, Informatics and Bio-computing
>Ontario Institute for Cancer Research
>MaRS Centre, South Tower
>101 College Street, Suite 800
>Toronto, Ontario, Canada M5G 0A3
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>On 11-09-01 2:13 PM, "Parul Kudtarkar" <parulk <at> caltech.edu> wrote:
>>Dear Biomart community,
>>Are there any biomart settings which would help me retrieve sequence data
>>and download in fasta format(i.e.
>>Attached is a screen shot of how the sequence is currently displayed
>>is not very convenient to view in browser.
>>Thanks and regards,
>>Center for Computational Regulatory Genomics
>>California Institute of Technology
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