headers
Michael Johnston | 9 Feb 2010 11:31
Picon
Gravatar

Remove automatic initialisation of database interface. [...]

Commit from mjohnston 2010-02-09 11:31 CET
Remove automatic initialisation of database interface. Can take a potentially long amount of time which hampers running scripts. Module File name Revision
Adun Tools/AdunShell/AdunShellTool.m 1.16 >>> 1.17


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from mjohnston</td>
        <td align="right">2010-02-09 11:31 CET</td>
      </tr></table>Remove automatic initialisation of database interface.
Can take a potentially long amount of time which hampers running scripts.

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">Tools/AdunShell/AdunShellTool.m</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Tools/AdunShell/AdunShellTool.m?rev=1.16&amp;content-type=text/vnd.viewcvs-markup">1.16</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Tools/AdunShell/AdunShellTool.m?r1=1.16&amp;r2=1.17">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Tools/AdunShell/AdunShellTool.m?rev=1.17&amp;content-type=text/vnd.viewcvs-markup">1.17</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |
headers
Michael Johnston | 9 Feb 2010 11:32
Picon
Gravatar

BugFix: Checking if host was nil before it was initialised in certain circumstances.

Commit from mjohnston 2010-02-09 11:32 CET
BugFix: Checking if host was nil before it was initialised in certain circumstances. Module File name Revision
Adun UL/ULFramework/ULServerManager.m 1.35 >>> 1.36


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from mjohnston</td>
        <td align="right">2010-02-09 11:32 CET</td>
      </tr></table>BugFix: Checking if host was nil before it was initialised in certain circumstances.

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">UL/ULFramework/ULServerManager.m</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/ULServerManager.m?rev=1.35&amp;content-type=text/vnd.viewcvs-markup">1.35</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/ULServerManager.m?r1=1.35&amp;r2=1.36">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/ULServerManager.m?rev=1.36&amp;content-type=text/vnd.viewcvs-markup">1.36</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |
headers
Nils Drechsel | 9 Feb 2010 17:23
Picon
Favicon

working version (energies and forces)

Commit from nilsdrechsel 2010-02-09 17:23 CET
working version (energies and forces) Module File name Revision
Adun Kernel/AdunKernel/Framework/AdunObcGBTerm.m 1.1 >>> 1.2


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from nilsdrechsel</td>
        <td align="right">2010-02-09 17:23 CET</td>
      </tr></table>working version (energies and forces)

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">Kernel/AdunKernel/Framework/AdunObcGBTerm.m</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Kernel/AdunKernel/Framework/AdunObcGBTerm.m?rev=1.1&amp;content-type=text/vnd.viewcvs-markup">1.1</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Kernel/AdunKernel/Framework/AdunObcGBTerm.m?r1=1.1&amp;r2=1.2">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Kernel/AdunKernel/Framework/AdunObcGBTerm.m?rev=1.2&amp;content-type=text/vnd.viewcvs-markup">1.2</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |
headers
Nils Drechsel | 9 Feb 2010 17:50
Picon
Favicon

working project file (derived from a previous clean cvs version)

Commit from nilsdrechsel 2010-02-09 17:50 CET
working project file (derived from a previous clean cvs version) Module File name Revision
Adun Adun.xcodeproj/project.pbxproj 1.40 >>> 1.41


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from nilsdrechsel</td>
        <td align="right">2010-02-09 17:50 CET</td>
      </tr></table>working project file (derived from a previous clean cvs version)

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">Adun.xcodeproj/project.pbxproj</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Adun.xcodeproj/project.pbxproj?rev=1.40&amp;content-type=text/vnd.viewcvs-markup">1.40</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Adun.xcodeproj/project.pbxproj?r1=1.40&amp;r2=1.41">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Adun.xcodeproj/project.pbxproj?rev=1.41&amp;content-type=text/vnd.viewcvs-markup">1.41</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |
headers
Nils Drechsel | 9 Feb 2010 18:02
Picon
Favicon

now with ADP and S2P

Commit from nilsdrechsel 2010-02-09 18:02 CET
now with ADP and S2P Module File name Revision
Adun UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml 1.4 >>> 1.5


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from nilsdrechsel</td>
        <td align="right">2010-02-09 18:02 CET</td>
      </tr></table>now with ADP and S2P

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml?rev=1.4&amp;content-type=text/vnd.viewcvs-markup">1.4</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml?r1=1.4&amp;r2=1.5">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml?rev=1.5&amp;content-type=text/vnd.viewcvs-markup">1.5</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |
headers
Nils Drechsel | 9 Feb 2010 18:27
Picon
Favicon

changed terminology of n- and c-terminal residues from suffix to prefix

Commit from nilsdrechsel 2010-02-09 18:27 CET
changed terminology of n- and c-terminal residues from suffix to prefix Module File name Revision
Adun UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml 1.5 >>> 1.6


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from nilsdrechsel</td>
        <td align="right">2010-02-09 18:27 CET</td>
      </tr></table>changed terminology of n- and c-terminal residues from suffix to prefix

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml?rev=1.5&amp;content-type=text/vnd.viewcvs-markup">1.5</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml?r1=1.5&amp;r2=1.6">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/Resources/ForceFields/Amber/AmberTopology.ffml?rev=1.6&amp;content-type=text/vnd.viewcvs-markup">1.6</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |
headers
Nils Drechsel | 9 Feb 2010 18:29
Picon
Favicon

will now save n- and c-terminal residues in a different terminology (prefix style)

Commit from nilsdrechsel 2010-02-09 18:29 CET
will now save n- and c-terminal residues in a different terminology (prefix style) Module File name Revision
Adun Scripts/convert_amber_topology_to_ffml.st 1.1 >>> 1.2


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from nilsdrechsel</td>
        <td align="right">2010-02-09 18:29 CET</td>
      </tr></table>will now save n- and c-terminal residues in a different terminology (prefix style)

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">Scripts/convert_amber_topology_to_ffml.st</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Scripts/convert_amber_topology_to_ffml.st?rev=1.1&amp;content-type=text/vnd.viewcvs-markup">1.1</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Scripts/convert_amber_topology_to_ffml.st?r1=1.1&amp;r2=1.2">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Scripts/convert_amber_topology_to_ffml.st?rev=1.2&amp;content-type=text/vnd.viewcvs-markup">1.2</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |
headers
Nils Drechsel | 10 Feb 2010 11:08
Picon
Favicon

changed energy output from Kcal/mol to simunits

Commit from nilsdrechsel 2010-02-10 11:08 CET
changed energy output from Kcal/mol to simunits Module File name Revision
Adun Kernel/AdunKernel/Framework/AdunObcGBTerm.m 1.2 >>> 1.3


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from nilsdrechsel</td>
        <td align="right">2010-02-10 11:08 CET</td>
      </tr></table>changed energy output from Kcal/mol to simunits

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">Kernel/AdunKernel/Framework/AdunObcGBTerm.m</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Kernel/AdunKernel/Framework/AdunObcGBTerm.m?rev=1.2&amp;content-type=text/vnd.viewcvs-markup">1.2</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Kernel/AdunKernel/Framework/AdunObcGBTerm.m?r1=1.2&amp;r2=1.3">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Kernel/AdunKernel/Framework/AdunObcGBTerm.m?rev=1.3&amp;content-type=text/vnd.viewcvs-markup">1.3</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |
headers
Nils Drechsel | 10 Feb 2010 11:10
Picon
Favicon

added AdunObcGBTerm

Commit from nilsdrechsel 2010-02-10 11:10 CET
added AdunObcGBTerm Module File name Revision
Adun Kernel/AdunKernel/Resources/ScriptingInfo.plist 1.19 >>> 1.20


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from nilsdrechsel</td>
        <td align="right">2010-02-10 11:10 CET</td>
      </tr></table>added AdunObcGBTerm

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">Kernel/AdunKernel/Resources/ScriptingInfo.plist</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Kernel/AdunKernel/Resources/ScriptingInfo.plist?rev=1.19&amp;content-type=text/vnd.viewcvs-markup">1.19</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Kernel/AdunKernel/Resources/ScriptingInfo.plist?r1=1.19&amp;r2=1.20">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/Kernel/AdunKernel/Resources/ScriptingInfo.plist?rev=1.20&amp;content-type=text/vnd.viewcvs-markup">1.20</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |
headers
Nils Drechsel | 10 Feb 2010 11:11
Picon
Favicon

added OBC-Generalized Born & Semi-Explicit Solvation

Commit from nilsdrechsel 2010-02-10 11:11 CET
added OBC-Generalized Born & Semi-Explicit Solvation Module File name Revision
Adun UL/ULFramework/Resources/objectTemplates.plist 1.11 >>> 1.12


Generated by cvsreport 0.3.5-cvs

<div>

    <table width="100%" class="csetheader"><tr>
<td align="left">Commit from nilsdrechsel</td>
        <td align="right">2010-02-10 11:11 CET</td>
      </tr></table>added OBC-Generalized Born &amp; Semi-Explicit Solvation

    <table cellspacing="0" cellpadding="3" class="history">
<tr class="history">
        Module
        File name
        Revision
      </tr>
<tr class="itemM0">
<td class="itemact"></td>
        <td class="item">Adun</td>
        <td class="item">UL/ULFramework/Resources/objectTemplates.plist</td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/Resources/objectTemplates.plist?rev=1.11&amp;content-type=text/vnd.viewcvs-markup">1.11</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/Resources/objectTemplates.plist?r1=1.11&amp;r2=1.12">&gt;&gt;&gt;</a></td>
        <td class="itemrev"><a href="http://cvs.gna.org/viewcvs/adun/Adun/UL/ULFramework/Resources/objectTemplates.plist?rev=1.12&amp;content-type=text/vnd.viewcvs-markup">1.12</a></td>
      </tr>
</table>
<p><br></p>
    <p class="footer">Generated by <a href="http://home.gna.org/cvsreport/">cvsreport 0.3.5-cvs</a></p>

  </div>
Permalink | Reply | 0 comments |

Gmane