Re: emboss and 10.6

I just noticed that emboss is restricted to 10.4 and 10.5 because it
depends on system-java14. From the emboss website I know it also works
with java 1.5. So is there a way that I can change the info file to
include system-java15? Or maybe just system-java, without the version
number? What java version is included on 10.6?

Thanks,

- Koen.

On Tue, Sep 29, 2009 at 1:30 PM, Koen van der Drift
<koenvanderdrift <at> gmail.com> wrote:
> Hi,
>
> I got a report from a user that emboss builds fine on 10.6/64bit. He
> also added a -O3 optimization without any problems. I have a PPC and
> am stuck on 10.5, so cannot verify it.
>
> Not sure if this is the way to report it, but feel free to add emboss
> to the list of packages that works with 10.6.
>
>
> Thanks,
>
> - Koen.
>

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Re: Fink update all failed compiling gcc 4.4.4

  The issue of build failures from development libraries
in /usr/local seems to come up endlessly. I have wondered
if there is some way that a 'strict' build mode could be
introduced into fink. The idea would be for packages known
to commonly suffer from this issue, the info file could
invoke a strict mode during the fink build process where
fink would first look for headers or static libraries in
/usr/local. If found, the build would abort with a clear
message that /usr/local needs to be moved aside. Unless
the package maintainer included the strict build keyword
in the info file, this check would not normally occur.
             Jack

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Re: Fink update all failed compiling gcc 4.4.4

Jack Howarth wrote:
>   The issue of build failures from development libraries
> in /usr/local seems to come up endlessly. I have wondered
> if there is some way that a 'strict' build mode could be
> introduced into fink. The idea would be for packages known
> to commonly suffer from this issue, the info file could
> invoke a strict mode during the fink build process where
> fink would first look for headers or static libraries in
> /usr/local. If found, the build would abort with a clear
> message that /usr/local needs to be moved aside. Unless
> the package maintainer included the strict build keyword
> in the info file, this check would not normally occur.

Can't the package itself just do this on its own during CompileScript?

if -e /usr/local/include/evil.h ; echo "you need to move /usr/local" ; 
exit 1

No need to add extra code to fink and have it maintain an ever growing 
list of possibly offending headers/libraries.

Hanspeter

--

-- 
Hanspeter Niederstrasser
hanspeter AT snaggledworks DOT com

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Re: Fink update all failed compiling gcc 4.4.4

Hanspeter,
   I wasn't proposing a check for a specific list
of files but rather as simple option of a strict
build mode which would abort if any *.h or *.a
files existed inside of /usr/local.
               Jack

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Re: Fink update all failed compiling gcc 4.4.4

Jack Howarth wrote:
>    I wasn't proposing a check for a specific list
> of files but rather as simple option of a strict
> build mode which would abort if any *.h or *.a
> files existed inside of /usr/local.

Jack Howarth earlier wrote:
> The idea would be for packages known
> to commonly suffer from this issue, the info file could
> invoke a strict mode during the fink build process where
> fink would first look for headers or static libraries in
> /usr/local

That's what I read this as, but regardless, instead of doing "if -e 
/usr/local/include/evil.h", a package could just as easily just see if 
there' _a_ file in /usr/local and crash out.  The end result is the 
same, though.

The possibilities mentioned so far are 1) add code into Fink to have a 
'strict' tag, followed by 2) have packages susceptible to bad files be 
marked 'Strict: true', or A) have packages susceptible to bad files add 
a quick check into CompileScript.  The 2nd path seems a heck of a lot 
easier and can be done by any maintainer, plus it's probably more flexible.

Hanspeter

--

-- 
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hanspeter at snaggledworks.com

pymol-py26 in stable requires pmw-py26 which is in unstable only

I've "inherited" pymol and just got email from a user who I surmise is  
trying to install the stable pymol-py26 and runs into an unmet  
dependency for pmw-py26.  (The problem doesn't arise for -py25  
variants, so I think what happened it a newer pymol got moved into  
stable without the upgrade needed for the dependency.)

What is the best course of action?

Thanks.

Bill

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Re: pymol-py26 in stable requires pmw-py26 which is in unstable only

Bill,

Writing to the maintainer (in this case "None") was the correct course  
of action.

I've just moved the unstable version to stable.

  -- Dave

On Oct 3, 2009, at 12:34 PM, William G. Scott wrote:

> I've "inherited" pymol and just got email from a user who I surmise is
> trying to install the stable pymol-py26 and runs into an unmet
> dependency for pmw-py26.  (The problem doesn't arise for -py25
> variants, so I think what happened it a newer pymol got moved into
> stable without the upgrade needed for the dependency.)
>
> What is the best course of action?
>
> Thanks.
>
> Bill
>
>
>
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Fink stable should upgrade Lua51 package

http://pdb.finkproject.org/pdb/package.php/lua51

Just noticed today that fink stable is lagging behind in 5.1.1-3,  
which is way old.

Asking the unstable 5.1.4-1 to be made stable; haven't gotten any  
negative feedback on it at all.

This is crucial for running multithreading on Lua (>= 5.1.1-14 is  
required).

- Asko

ps. I did a ticket on this. Don't know if that is the right way to  
proceed: #2873092

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Re: Fink stable should upgrade Lua51 package

Asko Kauppi wrote:
> http://pdb.finkproject.org/pdb/package.php/lua51
>
> Just noticed today that fink stable is lagging behind in 5.1.1-3,  
> which is way old.
>
> Asking the unstable 5.1.4-1 to be made stable; haven't gotten any  
> negative feedback on it at all.
>
> This is crucial for running multithreading on Lua (>= 5.1.1-14 is  
> required).
>
> - Asko
>
>
> ps. I did a ticket on this. Don't know if that is the right way to  
> proceed: #2873092
>   
Are all of the dependencies available in stable?
Is it known to build on 10.6/32 bit? 10.6/64-bit ? 

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gcc44-4.4.1-1000

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