Koen van der Drift | 2 Oct 2008 00:46

Re: perl 586 packages in 10.5?

moving to fink-devel...

On Sep 26, 2008, at 3:31 AM, Martin Costabel wrote:

> The user-friendly solution would be to have two packages, one for  
> 10.4 that depends on -pm586, and one for 10.5 that depends on - 
> pm588. In this way, users don't need to install Fink perl packages,  
> the system perl will do.

So, I made two packages, tcoffee-10.4 and tcoffee-10.5, it builds fine  
on 10.5 (don't have 10.4). Should I also update the Package field in  
the info file to tcoffee-10.x, the validator didn't complain about it?

thanks,

- Koen.

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Alexander Hansen | 2 Oct 2008 00:55

Re: perl 586 packages in 10.5?


On Oct 1, 2008, at 6:46 PM, Koen van der Drift wrote:

> moving to fink-devel...
>
>
> On Sep 26, 2008, at 3:31 AM, Martin Costabel wrote:
>
>> The user-friendly solution would be to have two packages, one for
>> 10.4 that depends on -pm586, and one for 10.5 that depends on -
>> pm588. In this way, users don't need to install Fink perl packages,
>> the system perl will do.
>
> So, I made two packages, tcoffee-10.4 and tcoffee-10.5, it builds fine
> on 10.5 (don't have 10.4). Should I also update the Package field in
> the info file to tcoffee-10.x, the validator didn't complain about it?
>
> thanks,
>
> - Koen.
>

Nope.  Leave the name as tcoffee, and make sure that tcoffee-10.4 has  
Distribution: 10.4 and tcoffee-10.5 has Distribution: 10.5 .  fink  
will then do the right thing and pick the appropriate version for the  
OS.

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Daniel Macks | 2 Oct 2008 05:37

Re: perl 586 packages in 10.5?

On Wed, Oct 01, 2008 at 06:55:13PM -0400, Alexander Hansen wrote:
> 
> On Oct 1, 2008, at 6:46 PM, Koen van der Drift wrote:
> 
> > moving to fink-devel...
> >
> >
> > On Sep 26, 2008, at 3:31 AM, Martin Costabel wrote:
> >
> >> The user-friendly solution would be to have two packages, one for
> >> 10.4 that depends on -pm586, and one for 10.5 that depends on -
> >> pm588. In this way, users don't need to install Fink perl packages,
> >> the system perl will do.
> >
> > So, I made two packages, tcoffee-10.4 and tcoffee-10.5, it builds fine
> > on 10.5 (don't have 10.4). Should I also update the Package field in
> > the info file to tcoffee-10.x, the validator didn't complain about it?
> >
> > thanks,
> >
> > - Koen.
> >
> 
> Nope.  Leave the name as tcoffee, and make sure that tcoffee-10.4 has  
> Distribution: 10.4 and tcoffee-10.5 has Distribution: 10.5 .  fink  
> will then do the right thing and pick the appropriate version for the  
> OS.

OTOH, make sure the 10.5 one has a Revision "much higher" (maybe +100)
compared to the 10.4 one. The whole goal is for the user to have to

(Continue reading)

headers

Koen van der Drift | 2 Oct 2008 14:02

Re: perl 586 packages in 10.5?

>Nope.  Leave the name as tcoffee, and make sure that tcoffee-10.4 has  
>Distribution: 10.4 and tcoffee-10.5 has Distribution: 10.5 .  fink  
>will then do the right thing and pick the appropriate version for the  
>OS.

Ok, thanks - it should be all fine in cvs. Although on the package database, it still lists the previous
version of tcoffee (there was no need then to split for 10.4 and 10.5), but only for powerpc. For intel, it
lists the two new versions. I'm pretty sure I deleted the files from cvs, so I am not sure what to do now.

cheers,

- Koen.

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Alexander Hansen | 2 Oct 2008 14:48

Re: perl 586 packages in 10.5?

Koen van der Drift wrote:
>> Nope.  Leave the name as tcoffee, and make sure that tcoffee-10.4 has  
>> Distribution: 10.4 and tcoffee-10.5 has Distribution: 10.5 .  fink  
>> will then do the right thing and pick the appropriate version for the  
>> OS.
>>     
>
>
> Ok, thanks - it should be all fine in cvs. Although on the package database, it still lists the previous
version of tcoffee (there was no need then to split for 10.4 and 10.5), but only for powerpc. For intel, it
lists the two new versions. I'm pretty sure I deleted the files from cvs, so I am not sure what to do now.
>
> cheers,
>
> - Koen.
>
>
>
>
>
>   
The package page in the pdb isn't updating properly, so it's nothing you
did or didn't do.  The summary page works OK and the links to the .info
files go to the right place.

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charlie strauss | 2 Oct 2008 21:31

Scipy.signals broken in fink but works in Yum

100% reproducible in Fink 0.28.5 on intel macintosh

The scipy package in fink (as of 10/02/08) has a broken signal processing package. This appears to be a fink issue not a scipy issue because the analogous package for scipy on ubuntu (synaptic pkg manager) works properly.

The error message below appears to be having problems with fft libraries. However it should be noted that other python modules that use fft libraries (such as pylab) do not have errors, so one suspect the error is in build of scipy .signals not in the libraroes them selves.

here is the example of how to reproduce this and the error message:

In [2]: from scipy import signal

---------------------------------------------------------------------------

ImportError Traceback (most recent call last)

/Users/cems/<ipython console> in <module>()

/sw/lib/python2.5/site-packages/scipy/signal/__init__.py in <module>()

10 from filter_design import *

11 from ltisys import *

---> 12 from signaltools import *

13 from wavelets import *

14

/sw/lib/python2.5/site-packages/scipy/signal/signaltools.py in <module>()

5 import sigtools

6 from scipy import special, linalg

----> 7 from scipy.fftpack import fft, ifft, ifftshift, fft2, ifft2

8 from numpy import polyadd, polymul, polydiv, polysub, \

9 roots, poly, polyval, polyder, cast, asarray, isscalar, atleast_1d, \

/sw/lib/python2.5/site-packages/scipy/fftpack/__init__.py in <module>()

8 from fftpack_version import fftpack_version as __version__

9

---> 10 from basic import *

11 from pseudo_diffs import *

12 from helper import *

/sw/lib/python2.5/site-packages/scipy/fftpack/basic.py in <module>()

11 from numpy import asarray, zeros, swapaxes, integer, array

12 import numpy

---> 13 import _fftpack as fftpack

14

15 import atexit

ImportError: dlopen(/sw/lib/python2.5/site-packages/scipy/fftpack/_fftpack.so, 2): Library not loaded: /opt/local/lib/libfftw3.3.dylib

Referenced from: /sw/lib/python2.5/site-packages/scipy/fftpack/_fftpack.so

Reason: image not found

Charlie Strauss

Bioscience Division

cems <at> lanl.gov

505 665 4838

Quidquid latine dictum sit, altum sonatur.

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Alexander Hansen | 2 Oct 2008 22:15

Re: Scipy.signals broken in fink but works in Yum

On Oct 2, 2008, at 3:31 PM, charlie strauss wrote:

100% reproducible in Fink 0.28.5 on intel macintosh

In what sense? Did you try multiple machines?

The scipy package in fink (as of 10/02/08) has a broken signal processing package. This appears to be a fink issue not a scipy issue because the analogous package for scipy on ubuntu (synaptic pkg manager) works properly.

The error message below appears to be having problems with fft libraries. However it should be noted that other python modules that use fft libraries (such as pylab) do not have errors, so one suspect the error is in build of scipy .signals not in the libraroes them selves.

here is the example of how to reproduce this and the error message:

In [2]: from scipy import signal

---------------------------------------------------------------------------

ImportError Traceback (most recent call last)

/Users/cems/<ipython console> in <module>()

/sw/lib/python2.5/site-packages/scipy/signal/__init__.py in <module>()

   10 from filter_design import *

   11 from ltisys import *

---> 12 from signaltools import *

   13 from wavelets import *

   14

/sw/lib/python2.5/site-packages/scipy/signal/signaltools.py in <module>()

   5 import sigtools

   6 from scipy import special, linalg

----> 7 from scipy.fftpack import fft, ifft, ifftshift, fft2, ifft2

   8 from numpy import polyadd, polymul, polydiv, polysub, \

   9 roots, poly, polyval, polyder, cast, asarray, isscalar, atleast_1d, \

/sw/lib/python2.5/site-packages/scipy/fftpack/__init__.py in <module>()

   8 from fftpack_version import fftpack_version as __version__

   9

---> 10 from basic import *

   11 from pseudo_diffs import *

   12 from helper import *

/sw/lib/python2.5/site-packages/scipy/fftpack/basic.py in <module>()

   11 from numpy import asarray, zeros, swapaxes, integer, array

   12 import numpy

---> 13 import _fftpack as fftpack

   14

   15 import atexit

ImportError: dlopen(/sw/lib/python2.5/site-packages/scipy/fftpack/_fftpack.so, 2): Library not loaded: /opt/local/lib/libfftw3.3.dylib

  Referenced from: /sw/lib/python2.5/site-packages/scipy/fftpack/_fftpack.so

  Reason: image not found

Charlie Strauss

Bioscience Division

cems <at> lanl.gov

505 665 4838

Quidquid latine dictum sit, altum sonatur.

Your issue appears to be from mixing Fink and Macports. Your _fftpack.so is linked to a library from Macports, which you removed, and it doesn't know what to do anymore. Do a "fink rebuild scipy-py25".

The issue is local to your machine, and is not intrinsic to Fink's packaging of scipy.

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Koen van der Drift | 3 Oct 2008 20:11

Re: perl 586 packages in 10.5?

>The package page in the pdb isn't updating properly, so it's nothing you
>did or didn't do.  The summary page works OK and the links to the .info
>files go to the right place.

Yeah I noticed. After making the rev number 100 higher for the 10.5 info file as suggested by Dan Macks, it
looks different again :)

- Koen.

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TheSin | 3 Oct 2008 21:03

Re: Bug in php5 package

fixed for cli and cgi variants in cvs now, thanks for the report.
---
TS
http://southofheaven.org/
Chaos is the beginning and end, try dealing with the rest.

On 30-Sep-08, at 2:27 AM, Mario wrote:

> Hi there,
>
> I stated this bug already in the general mailing list. But nobody
> recognized it there.
>
> I've installed the php5-cli package and there seems to be something
> wrong with the php5.info file. On lines 202-203 you find the  
> following:
>
>   --with-config-file-path=/etc/php5/cli \
>   --with-config-file-scan-dir=/etc/php5/conf.d \
>
> The problem is that the config files are not in /etc/php5/cli,
> they are in %p/etc/php5/cli (/sw/etc/php5/cli)
> The cgi version has the same bug. Only the apache2 version works  
> correct.
>
> So it would be nice to update the package in order to get the right  
> paths.
>
> Another point: It seems the php.ini files will get overridden  
> everytime
> an update occurs. If that's the case it would be really bad to
> reconfigure php all the time.
>
> Can someone help me out here?
> Thanks
>
>
> -------------------------------------------------------------------------
> This SF.Net email is sponsored by the Moblin Your Move Developer's  
> challenge
> Build the coolest Linux based applications with Moblin SDK & win  
> great prizes
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> the world
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> Fink-devel mailing list
> Fink-devel <at> lists.sourceforge.net
> http://news.gmane.org/gmane.os.apple.fink.devel
>

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Mario Volke | 3 Oct 2008 21:04

Re: Bug in php5 package

ok thanks

TheSin schrieb:

fixed for cli and cgi variants in cvs now, thanks for the report.
---
TS
http://southofheaven.org/
Chaos is the beginning and end, try dealing with the rest.

On 30-Sep-08, at 2:27 AM, Mario wrote:

Hi there,

I stated this bug already in the general mailing list. But nobody
recognized it there.

I've installed the php5-cli package and there seems to be something
wrong with the php5.info file. On lines 202-203 you find the following:

--with-config-file-path=/etc/php5/cli \
--with-config-file-scan-dir=/etc/php5/conf.d \

The problem is that the config files are not in /etc/php5/cli,
they are in %p/etc/php5/cli (/sw/etc/php5/cli)
The cgi version has the same bug. Only the apache2 version works correct.

So it would be nice to update the package in order to get the right paths.

Another point: It seems the php.ini files will get overridden everytime
an update occurs. If that's the case it would be really bad to
reconfigure php all the time.

Can someone help me out here?
Thanks

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--
div#signatur { margin-top:3em; padding-top:1em; border-top:1px solid #EEE; font-family:Verdana, Arial, sans-serif; line-height:1em; font-size:1em; color:#555; background-color:transparent; } div#signatur a { color:#555; background-color:transparent; text-decoration:none; } div#signatur a:hover { color:#FFF; text-decoration:underline; } div#signatur h1 { font-size:1.2em; font-weight:bold; } div#signatur h1 span { font-weight:normal; font-size:0.8em; font-style:italic; }

webholics
development + design

Mario Volke

www.webholics.de
mario.volke <at> webholics.de

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Re: perl 586 packages in 10.5?

Re: perl 586 packages in 10.5?

Re: perl 586 packages in 10.5?

Re: perl 586 packages in 10.5?

Re: perl 586 packages in 10.5?

Scipy.signals broken in fink but works in Yum

Re: Scipy.signals broken in fink but works in Yum

Re: perl 586 packages in 10.5?

Re: Bug in php5 package

Re: Bug in php5 package

webholicsdevelopment + design

webholics
development + design