Xiaoguang Xue | 19 Oct 13:16 2014
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Failed: phase compiling: gcc49-4.9.1-1000 failed on OS X 10.10

Hi, when I installed pymol-py27 and apbs packages on OS X 10.10, I got an error about gcc. Any help would be appreciated!

....

make[3]: Leaving directory `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/gcc'

mkdir x86_64-apple-darwin14.0.0/libgcc

Checking multilib configuration for libgcc...

Configuring stage 1 in x86_64-apple-darwin14.0.0/libgcc

configure: creating cache ./config.cache

checking build system type... x86_64-apple-darwin14.0.0

checking host system type... x86_64-apple-darwin14.0.0

checking for --enable-version-specific-runtime-libs... no

checking for a BSD-compatible install... /sw/bin/ginstall -c

checking for gawk... awk

checking for x86_64-apple-darwin14.0.0-ar... ar

checking for x86_64-apple-darwin14.0.0-lipo... lipo

checking for x86_64-apple-darwin14.0.0-nm... /sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/./gcc/nm

checking for x86_64-apple-darwin14.0.0-ranlib... ranlib

checking for x86_64-apple-darwin14.0.0-strip... strip

checking whether ln -s works... yes

checking for x86_64-apple-darwin14.0.0-gcc... /sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/./gcc/xgcc -B/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/./gcc/ -B/sw/lib/gcc4.9/x86_64-apple-darwin14.0.0/bin/ -B/sw/lib/gcc4.9/x86_64-apple-darwin14.0.0/lib/ -isystem /sw/lib/gcc4.9/x86_64-apple-darwin14.0.0/include -isystem /sw/lib/gcc4.9/x86_64-apple-darwin14.0.0/sys-include   

checking for suffix of object files... configure: error: in `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir/x86_64-apple-darwin14.0.0/libgcc':

configure: error: cannot compute suffix of object files: cannot compile

See `config.log' for more details.

make[2]: *** [configure-stage1-target-libgcc] Error 1

make[2]: Leaving directory `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir'

make[1]: *** [stage1-bubble] Error 2

make[1]: Leaving directory `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir'

make: *** [bootstrap-lean] Error 2

### execution of /tmp/fink.7K4ps failed, exit code 2

### execution of /tmp/fink.WHw3V failed, exit code 2

Removing runtime build-lock...

Removing build-lock package...

/sw/bin/dpkg-lockwait -r fink-buildlock-gcc49-4.9.1-1000

(Reading database ... 22141 files and directories currently installed.)

Removing fink-buildlock-gcc49-4.9.1-1000 ...

Failed: phase compiling: gcc49-4.9.1-1000 failed

....

Also include the following system information:

Package manager version: 0.38.0

Distribution version: selfupdate-rsync Sun Oct 19 13:00:35 2014, 10.10, x86_64

Trees: local/main stable/main stable/crypto

Xcode.app: 6.0.1

Xcode command-line tools: 6.1.0.0.1.1413057044

Max. Fink build jobs:  4



--
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Utrecht University
Crystal & Structural Chemistry
Padualaan 8. Room N807
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Xiaoguang Xue | 18 Oct 19:55 2014
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Got an error when I tried to install pymol in OS X 10.10

Dear developers

I got an error when I tried to install pymol through fink.

fink install pymol-py27 apbs

Scanning package description files..........

Information about 9738 packages read in 1 seconds.

Can't resolve dependency "po4a" for package "dos2unix-7.1-1" (no matching

packages/versions found)

Exiting with failure.


It seems like there's some problem of po4a package. Does anyone of you can help me?

Thanks!

--
Xiaoguang Xue, PhD student
Utrecht University
Crystal & Structural Chemistry
Padualaan 8. Room N807
3584 CH Utrecht
The Netherlands
Tel. +31-30-253-2383
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Max Horn | 8 Oct 13:58 2014
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Todai Fink Team -- working email address?

Hi,

I recently tried to contact "Todai Fink Team", but the mail bounced:

 "Last Error: There is no active MX server for sodan.ecc.u-tokyo.ac.jp"

Assuming this fails again (this email is CC'ed there), does anybody know how to reach them? All .info files
with that maintainer address should then be updated to the new working address. Or, if we cannot establish
contact, all should be set to "unmaintained".

Cheers,
Max
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William G. Scott | 5 Oct 18:41 2014

command-line tools for 10.10-beta ?

Hi folks:

I’m trying to do a fresh fink install using my 10.10-beta (public, not paid developer) distribution of OS
X to make sure my packages
are in shape for the upcoming release of 10.10.  I’ve installed the Xcode 6.1 release for 10.10 beta from
Apple’s website.  I can’t find the corresponding command-line tools for 10.10b anywhere on the
(non-paid) Apple developer tools webpage. (I could swear it had this a couple of months ago when I
installed this on my laptop.) Is this now only available for paid developers?

On bootstrapping, I get this:

Distribution: 10.10
Architecture: x86_64
Checking cc... looks good.
Checking make... looks good.
Checking head... looks good.
Verifying that installed Xcode Command Line Tools version is supported...
ERROR: I couldn't find the correct receipt for the Command Line Tools
for your OS X version.  Tools from a prior OS X version won't work properly.
You can install them by running the command

	xcode-select —install

Issuing that command fails silently.

Likewise,  issuing

open "/System/Library/CoreServices/Install Command Line Developer Tools.app”  

also fails silently.

I’m stuck now. 

Any suggestions for what to do?

Thanks.

Bill

William G. Scott

http://scottlab.ucsc.edu/~wgscott

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Alexander Hansen | 5 Oct 02:07 2014
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C++ help for a build

Hi.  I just discovered that Octave-3.6.4 has decided it doesn't want to 
build with clang-6:

...
libtool: compile:  oct-cxx -DHAVE_CONFIG_H -I. -I.. -I./array 
-I./cruft/misc -Inumeric -I./numeric -Ioperators -I./operators 
-I./system -I./util -I../libgnu -I../libgnu -I/usr/X11/include 
-I/sw/include -Wall -W -Wshadow -Wold-style-cast -Wformat 
-Wpointer-arith -Wwrite-strings -Wcast-align -Wcast-qual -O3 -MD 
-D_THREAD_SAFE -pthread -MT array/array_libarray_la-int8NDArray.lo -MD 
-MP -MF array/.deps/array_libarray_la-int8NDArray.Tpo -c 
array/int8NDArray.cc  -fno-common -DPIC -o 
array/.libs/array_libarray_la-int8NDArray.o
In file included from array/int16NDArray.cc:28:
In file included from ./array/int16NDArray.h:26:
In file included from ./array/intNDArray.h:26:
In file included from ./array/MArray.h:28:
In file included from ./array/Array.h:32:
In file included from

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/algorithm:624:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1169:21: 
error:
       call to '__test' is ambiguous
    typedef decltype(__test(declval<_Tp>())) type;

^~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:504:32: 
note:
       expanded from macro 'decltype'
#define decltype(x) __typeof__(x)
                                ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchIn 
file included from array/int32NDArray.cc:28:
In file included from 
./array/int32NDArray.h:ain/usr/bin/../include/c++/v1/type_traits26:
In file included from ./array/intNDArray.h::118226::
18In file included from :./array/MArray.h :28:
In file included from note./array/Array.h: :32:

In file included from

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/algorithmin: 
624instantiation:
  of template class
       'std::__1::__numeric_type<octave_int<short> >'

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traitsrequested: 
1169here:21
: error:
       call to '__test' is ambiguous
           bool = __numeric_type<_A1>::value &&

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:959:14: 
note:
       in instantiation of    typedef decltype(__test(declval<_Tp>())) type;

^~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:504:32: 
note:
       expanded from macro 'decltype'default
  argument for '__promote<octave_int<short>,
       octave_int<short>, void>' required #define decltype(x) 
__typeof__(x)here

                                ^
     typename __promote<_A1, _A2>::type

^~~~~~~~~~~~~~~~~~~
operators/mx-inlines.cc:/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits310::118231::18 
: note: note: while
substituting       indeduced  instantiationtemplate
of       argumentstemplate  intoclass
function       'std::__1::__numeric_type<octave_int<int>template 
 >''pow'  requested[with  here_A1
= octave_int<short>, _A2
       = octave_int<sho          bool = __numeric_type<_A1>::value &&

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cmath:959:14: 
note:
       in instantiation of default argument for '__promote<octave_int<int>,
       octave_int<int>, void>' required here
     typename __promote<_A1, _A2>::type
              ^~~~~~~~~~~~~~~~~~~
operators/mx-inlines.cc:310:31: note: while substituting deduced template
       arguments into function template 'pow' [with _A1 = 
octave_int<int>, _A2 =
       octave_int<int>]
DEFMXMAPPER2X (mx_inline_pow, pow)
                               ^
operators/mx-inlines.cc:299:41: note: expanded from macro 'DEFMXMAPPER2X'
{ for (size_t i = 0; i < n; i++) r[i] = FUN (x[i], y[i]); } \
                                         ^
array/int32NDArray.cc:58:42: note: in instantiation of function template
       specialization 'mx_inline_pow<octave_int<int>, octave_int<int>,
       octave_int<int> >' requested here
rt>]
BSXFUN_OP_DEF_MXLOOP (pow, int32NDArray, mx_inline_pow)
                                          ^
DEFMXMAPPER2X (mx_inline_pow, pow)
                               ^
numeric/bsxfun-defs.cc:219:operators/mx-inlines.cc12::299 :41:note : 
expandednote : from expandedmacro  from'BSXFUN_OP_DEF_MXLOOP' macro
  'DEFMXMAPPER2X'
     (x, y, LOOP, LOOP, LOOP); }

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1158:17: 
note:
       candidate function
{ for (size_t i = 0; i < n; i++) r[i] = FUN (x[i], y[i]); } \
                                         ^
    static float __test(float);
                 ^
array/int16NDArray.cc:58:42:

no/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1159:18: 
note:
       candidate function
    static double __test(char);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1160:18: 
note: te
:       candidate infunction instantiation
  of function template
       specialization 'mx_inline_pow<octave_int<short>,    static double 
__test(int);octave_int<short>,

       octave_int<short>                 ^
 >' requested
here
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1161:18: 
note:
       candidate function
BSXFUN_OP_DEF_MXLOOP (pow, int16NDArray, mx_inline_pow)
                                          ^
    static double __test(unsigned);

^
numeric/bsxfun-defs.cc:/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits219::116212::18 
: note: note: expanded
from       candidatemacro  function'BSXFUN_OP_DEF_MXLOOP'

    static double __test(long);    (x, y, LOOP, LOOP, LOOP); }

                  ^          
^

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1163:18: 
note:
       candidate function
    static double __test(unsigned long);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1164:18: 
note:

candidate/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits 
:function1158:
17: note:
       candidate function
    static double __test(long long);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits 
   static float __test(float);:
1165:                ^18
: note:
       candidate
function
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_trait 
   static double __test(unsigned long long);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1166:18: 
note:
       candidate function
    static double __test(double);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1167:23: 
note: s
       :candidate1159 :function18:
  note:
       candidate function
    static long double __test(long double);
                       ^
    static double
__test(char);
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits: 
                 ^1157
:16: note:
       candidate 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traitsfunction
    static void __test(...);
                ^
:1160:18: note:
       candidate function
    static double __test(int);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1161:18: 
note:
       candidate function
    static double __test(unsigned);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1162:18: 
note:
       candidate function
    static double __test(long);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1163:18: 
note:
       candidate function
    static double __test(unsigned long);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1164:18: 
note:
       candidate function
    static double __test(long long);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1165:18: 
note:
       candidate function
    static double __test(unsigned long long);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1166:18: 
note:
       candidate function
    static double __test(double);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1167:23: 
note:
       candidate function
    static long double __test(long double);

^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/type_traits:1157:16: 
note:
       candidate function
    static void __test(...);
                ^
1 error generated.
make[2]: *** [array/array_libarray_la-int32NDArray.lo] Error 1
...
------

Any help would be appreciated.
-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

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Alexander Hansen | 1 Oct 23:22 2014
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build failure in qt5-mac-qtwebkit when fink's flex is present

...

( test -e Makefile.ANGLE.DerivedSources || /sw/lib/qt5-mac/bin/qmake

/sw/src/fink.build/qt5-mac-qtwebkit-5.3.2-1/qtwebkit-opensource-src-5.3.2/Source/ThirdParty/ANGLE/DerivedSources.pri 
-o Makefile.ANGLE.DerivedSources ) && 
/Applications/Xcode.app/Contents/Developer/usr/bin/make -f 
Makefile.ANGLE.DerivedSources
flex --noline --nounistd --outfile=generated/glslang_lex.cpp 
src/compiler/glslang.l
flex --noline --nounistd --outfile=generated/Tokenizer_lex.cpp 
src/compiler/preprocessor/Tokenizer.l
flex: unknown flag '-'.  For usage, try
	flex --help
bison --no-lines --skeleton=yacc.c --defines=generated/glslang_tab.h 
--output=generated/glslang_tab.cpp src/compiler/glslang.y
flex: unknown flag '-'.  For usage, try
	flex --help
make[2]: *** [generated/Tokenizer_lex.cpp] Error 1

...

Removing Fink's flex allows the build to proceed.

Unrelatedly, there appears to be a typo somewhere (possibly from 
upstream) which leads to numerous warnings:

clang: warning: argument unused during compilation: '-MMD'
-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

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David Lowe | 29 Sep 21:42 2014
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Picon

Error: package contains the shared library

	I'm attempting to package 'regina', which is an interpreter for the 'rexx' programming language.  It's
also my first info file from scratch.  After solving a few build issues, the validator now complains about
things i couldn't readily find fixes for in a web search:

> Validating .deb dir /sw/src/fink.build/root-regina-3.8.2-1...
> Error: Headers installed (files in an include/ directory), as well as a .dylib file, but package does not
declare BuildDependsOnly to be true (or false)
> Error: package contains the shared library
>           /sw/lib/libregina.dylib
>        but the corresponding install_name
>           libregina.dylib
>        is not an absolute pathname.
> Error: package contains the shared library
>           /sw/share/Regina-REXX/addons/libregutil.dylib
>        but the corresponding install_name
>           libregutil.dylib
>        is not an absolute pathname.
> Error: package contains the shared library
>           /sw/share/Regina-REXX/addons/librxtest1.dylib
>        but the corresponding install_name
>           librxtest1.dylib
>        is not an absolute pathname.
> Error: package contains the shared library
>           /sw/share/Regina-REXX/addons/librxtest2.dylib
>        but the corresponding install_name
>           librxtest2.dylib
>        is not an absolute pathname.

	How do i satisfy the validator?

Attachment (regina.info): application/octet-stream, 1569 bytes

sent from Mountain Lion

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Scott Hannahs | 26 Sep 13:55 2014
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Ghostscript fails to build

Fink wizards,

I am doing a clean fink install on a Mac OS X 10.9.5 system.  It works fine up until GhostScript is attempted.  
The log is below and seems to imply that there is an inconsistent dependency?

I tried the suggested fixes, but no joy.

It looks like my attempt to install octave requires epstool, but I am not sure why now installing
ghostscript requires epstool.  Nor do I understand why ghostscript requiring epstool requiring
ghostscript is not satisfied by installing ghostscript.

It appears to my simple understanding that only octave depends on epstool.

-Scott

> % /sw/bin/fink install ghostscript-nox
> Information about 9737 packages read in 1 seconds.
> The package 'ghostscript-nox' will be installed.
> Reading dependency for ghostscript-nox-9.14-1...
> Reading runtime dependency for ghostscript-nox-9.14-1...
> The following package will be installed or updated:
>  ghostscript-nox
> Reading buildlock packages...
> 	All buildlocks accounted for.
> 
> While trying to install:
>   ghostscript-nox-9.14-1
> 
> The following inconsistencies found:
>   Unsatisfied dependency in epstool: ghostscript
> 
> Trying to resolve dependencies...
> Could not resolve inconsistent dependencies!
> 
> Fink isn't sure how to install the above packages safely. You may be able to fix things by running:
> 
>   fink scanpackages
>   sudo apt-get update
>   sudo apt-get install ghostscript-nox=9.14-1
> 
> Failed: Fink::SysState: Could not resolve inconsistent dependencies
> 

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fink-0.37.0 fails to build under Mavericks 10.9 with Xcode-6

Dear Fink Developers,

Last week Apple made Xcode-6 the default Developer environment under Mavericks 10.9.5. I wanted to alert
you that a fresh Fink install via "./bootstrap" now fails under both the Xcode.app and the
CommandLineTools. It breaks when building the "apt" package:

env LANG=C LC_ALL=C /sw2/bin/tar  --no-same-owner --no-same-permissions -xf /sw2/src/apt_0.5.4.tar.gz
[ -r /sw2/fink/dists/stable/main/finkinfo/base/apt.patch ]
sed -e 's| <at> PREFIX <at> |/sw2|g' -e 's| <at> DIST <at> |10.3|g' <
/sw2/fink/dists/stable/main/finkinfo/base/apt.patch | patch -p1
patching file apt-inst/deb/dpkgdb.cc
patching file apt-inst/makefile
patching file apt-pkg/contrib/mmap.cc
patching file apt-pkg/contrib/mmap.h
patching file apt-pkg/deb/debindexfile.cc
patching file apt-pkg/deb/deblistparser.cc
patching file apt-pkg/deb/debsystem.cc
patching file apt-pkg/deb/debsystem.h
patching file apt-pkg/deb/debversion.cc
patching file apt-pkg/init.cc
patching file apt-pkg/pkgcachegen.cc
patching file apt-pkg/pkgcachegen.h
patching file apt-pkg/policy.cc
patching file apt-pkg/tagfile.cc
patching file apt-pkg/tagfile.h
patching file buildlib/environment.mak.in
patching file buildlib/library.mak
patching file buildlib/ostable
patching file cmdline/apt-cache.cc
patching file cmdline/apt-get.cc
patching file cmdline/apt-sortpkgs.cc
patching file configure
patching file configure.in
patching file doc/apt-cache.8
patching file doc/apt-cdrom.8
patching file doc/apt-config.8
patching file doc/apt-get.8
patching file doc/apt_preferences.5
patching file doc/sources.list.5
patching file dselect/install
patching file dselect/setup
patching file dselect/update
patching file methods/connect.cc
patching file methods/ftp.cc
patching file methods/rfc2553emu.h
patching file patch_flush
patching file apt-inst/contrib/extracttar.cc
patching file apt-pkg/contrib/system.h
patching file apt-inst/extract.cc
patching file apt-inst/deb/dpkgdb.cc
patching file apt-pkg/algorithms.cc
patching file apt-pkg/init.cc
patching file apt-pkg/deb/debsystem.cc
patching file apt-pkg/contrib/cdromutl.cc
patching file cmdline/apt-cache.cc
patching file cmdline/apt-config.cc
patching file cmdline/apt-extracttemplates.cc
patching file cmdline/apt-sortpkgs.cc
patching file apt-inst/contrib/extracttar.cc
patching file apt-pkg/deb/debsystem.h
patching file apt-pkg/pkgsystem.h
perl -pi -e 's|vector.h|vector|g' apt-pkg/pkgsystem.h include/apt-pkg/pkgsystem.h
Can't open include/apt-pkg/pkgsystem.h: No such file or directory, <> line 97.
perl -pi -e 's|iostream.h|iostream|g' apt-inst/contrib/extracttar.cc apt-inst/deb/dpkgdb.cc
apt-inst/extract.cc apt-pkg/algorithms.cc apt-pkg/contrib/error.cc cmdline/apt-cache.cc
cmdline/indexcopy.cc test/versiontest.cc 
perl -pi -e 's|fstream.h|fstream|g' apt-pkg/sourcelist.cc cmdline/apt-get.cc
sh patch_flush
for i in `grep -rl '#ifdef __GNUG__' .` ; do perl -pi -e 's/#ifdef __GNUG__/#if defined(__GNUG__) &&
!defined(__APPLE_CC__)/' $i; done
echo "x86_64\tx86_64" >> /sw2/src/fink.build/apt-0.5.4-1061/apt-0.5.4/buildlib/archtable
./configure --prefix=/sw2 --host=x86_64-apple-darwin`uname -r|cut -f1 -d.`
creating cache ./config.cache
checking host system type... x86_64-apple-darwin13
checking target system type... x86_64-apple-darwin13
checking build system type... x86_64-apple-darwin13
checking for gcc... gcc
checking whether the C compiler (gcc  ) works... yes
checking whether the C compiler (gcc  ) is a cross-compiler... no
checking whether we are using GNU C... yes
checking whether gcc accepts -g... no
checking for POSIXized ISC... no
checking for c++... c++
checking whether the C++ compiler (c++ -O2 -DEMULATE_MMAP -D__USE_MISC -fconstant-cfstrings
-DHAVE_SOCKLEN_T=1 ) works... yes
checking whether the C++ compiler (c++ -O2 -DEMULATE_MMAP -D__USE_MISC -fconstant-cfstrings
-DHAVE_SOCKLEN_T=1 ) is a cross-compiler... no
checking whether we are using GNU C++... yes
checking whether c++ accepts -g... no
checking how to run the C preprocessor... /lib/cpp
checking for ranlib... ranlib
checking for ar... ar
checking for library containing gethostbyname... none required
checking for library containing connect... none required
checking for db2/db.h... no
checking system architecture... x86_64
checking system OS... darwin
checking for C99 integer types... yes
checking for statvfs... yes
checking whether byte ordering is bigendian... no
checking for missing socklen_t... missing.
checking for h_errno... configure: error: not found.
### execution of ./configure failed, exit code 1
phase compiling: apt-0.5.4-1061 failed

Before reporting any errors, please run "fink selfupdate" and try again.
Also try using "fink configure" to set your maximum build jobs to 1 and
attempt to build the package again.
If you continue to have issues, please check to see if the FAQ on Fink's 
website solves the problem.  If not, ask on one (not both, please) of
these mailing lists:

	The Fink Users List <fink-users <at> lists.sourceforge.net>
	The Fink Beginners List <fink-beginners <at> lists.sourceforge.net>.

Please try to include the complete error message in your report.  This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.

Also include the following system information:
Package manager version: 0.37.0
Distribution version: selfupdate-point (bootstrap), 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 6.0.1
Xcode command-line tools: 6.0.0.0.1.1410400753
Max. Fink build jobs:  4

ERROR: Bootstrap phase 2 failed!
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Derek Homeier | 22 Sep 18:38 2014
Picon

aquaterm-dev-1.1.1-3 case sensitivity issues

Hi,

FYI building aquaterm with package validation fails for me on a *case sensitive* file system:

Validating .deb dir /scratch.noindex/fink.build/root-aquaterm-dev-1.1.1-3...
Error: Pathname collision on case-insensitive filesystems
	Offending file: /sw/share/aquaterm/adapters/c/ReadMe
	Offending file: /sw/share/aquaterm/adapters/fortran/ReadMe
	Offending file: /sw/share/aquaterm/adapters/pgplot/ReadMe
	Offending file: /sw/share/aquaterm/adapters/plplot/Readme

Cheers,
					Derek

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Kevin Horton | 18 Sep 01:55 2014

qt4-base-mac-4.8.6-2 compile failure on OS X 10.10 Public Beta 3

Attempts to compile qt4-base-mac-4.8.6-2 on OS X 10.10 Public Beta 3 fail with:

gcc -c -pipe -g -arch x86_64 -Xarch_x86_64 -mmacosx-version-min=10.10 -arch x86_64 -Xarch_x86_64 -mmacosx-version-min=10.10 -fvisibility=hidden -fvisibility-inlines-hidden -Wall -W -isysroot /Applications/Xcode6-Beta6.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk -DQT_SHARED -DQT_BUILD_GUI_LIB -DQT_NO_USING_NAMESPACE -DQT_NO_CAST_TO_ASCII -DQT_ASCII_CAST_WARNINGS -DQT3_SUPPORT -DQT_MOC_COMPAT -DQT_USE_QSTRINGBUILDER -DQT_NO_CUPS -DQT_NO_LPR -DQT_NO_OPENTYPE -DQT_NO_STYLE_WINDOWSVISTA -DQT_NO_STYLE_WINDOWSXP -DQT_NO_STYLE_GTK -DQT_NO_STYLE_WINDOWSCE -DQT_NO_STYLE_WINDOWSMOBILE -DQT_NO_STYLE_S60 -DQ_INTERNAL_QAPP_SRC -DQT_CORE_LIB -DQT_HAVE_MMX -DQT_HAVE_3DNOW -DQT_HAVE_SSE -DQT_HAVE_MMXEXT -DQT_HAVE_SSE2 -DQT_HAVE_SSE3 -DQT_HAVE_SSSE3 -DQT_HAVE_SSE4_1 -DQT_HAVE_SSE4_2 -DQT_HAVE_AVX -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../../mkspecs/macx-g++ -I. -I.moc/debug-shared -I../../include/QtCore -I../../include -I../../include/QtGui -I.rcc/debug-shared -Iimage -I../3rdparty/harfbuzz/src -Idialogs -I.uic/debug-shared -F/sw/src/fink.build/qt4-base-mac-4.8.6-2/qt-everywhere-opensource-src-4.8.6/lib kernel/qcocoaapplicationdelegate_mac.mm -o .obj/debug-shared/qcocoaapplicationdelegate_mac.o
kernel/qcocoaapplicationdelegate_mac.mm:125:28: error: cannot initialize a parameter of type 'id<NSFileManagerDelegate>' with an lvalue of type 'NSObject<NSApplicationDelegate> *'
        [NSApp setDelegate:reflectionDelegate];
                           ^~~~~~~~~~~~~~~~~~
/Applications/Xcode6-Beta6.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/System/Library/Frameworks/Foundation.framework/Headers/NSFileManager.h:109:47: note: passing argument to parameter 'delegate' here
<at> property (assign) id <NSFileManagerDelegate> delegate NS_AVAILABLE(10_5, 2_0);
                                              ^
1 error generated.
make[2]: *** [.obj/debug-shared/qcocoaapplicationdelegate_mac.o] Error 1
make[1]: *** [debug-all] Error 2
make: *** [sub-gui-make_default-ordered] Error 2
### execution of /tmp/fink.6bgd3 failed, exit code 2
### execution of /tmp/fink.vEpqs failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-qt4-base-mac-4.8.6-2
(Reading database ... 135184 files and directories currently installed.)
Removing fink-buildlock-qt4-base-mac-4.8.6-2 ...
Failed: phase compiling: qt4-base-mac-4.8.6-2 failed

--
Kevin Horton
Ottawa, Canada
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