Hanspeter Niederstrasser | 18 Jun 2013 16:45

io-compress 2.061 fails bzip2 tests on OS X 10.7

While building io-compress-2.0.61 on OS X 10.7, all the bzip2 tests 
fail.  I am using Apple's perl 5.12.3.  compres-raw-bzip2 is at 2.061, 
and it passed all of its tests.

This is the build log truncated around the first couple failing tests. 
The full log is at 
<http://www.snaggledworks.com/fink/logs/fink-build-log_io-compress-pm5123_2.061-1_2013.06.18-10.37.50>

+ make test
PERL_DL_NONLAZY=1 /usr/bin/arch -x86_64 perl5.12 
"-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 
'blib/arch')" t/*.t
t/000prereq.t ................... ok
t/001bzip2.t .................... ok

....

t/100generic-zip.t .............. ok
bad bad bad at t/compress/CompTestUtils.pm line 647.
# Looks like your test died before it could output anything.
t/101truncate-bzip2.t ...........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 4012/4012 subtests
t/101truncate-deflate.t ......... ok

....

t/103newtied-zip.t .............. ok

#     Failed test (t/compress/destroy.pl at line 52)
(Continue reading)

Kurt Schwehr | 17 Jun 2013 07:13
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not quite there yet with gdal 1.10.0

having trouble getting gdal 1.10.0 to build with any of the 3 libspatialite versions.  if any one has ideas, I'd appreciate any help.

I've updated a few of the libraries and will add pcre once spatialite/rasterlite work


-kurt
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Hanspeter Niederstrasser | 16 Jun 2013 13:29

Fink's mac-fsevents-pm5NNN fails to build on 10.6 and 10.7

The pkg mac-fsevents-pm5NNN fails to build on 10.6 with this error (10.7 
error is similar):

TEST_POD=1 make test || exit 2
PERL_DL_NONLAZY=1 /sw32/bin/perl5.8.8 "-MExtUtils::Command::MM" "-e" 
"test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/01use............ok 

t/02pod............ok 

t/03podcoverage....ok 

t/04critic.........skipped
         all skipped: Critic test only for developers.
t/05event..........
#   Failed test 'event received (poll interface)'
#   in t/05event.t at line 58.
t/05event..........ok 3/7Use of uninitialized value in subroutine entry 
at t/05event.t line 109.

#   Failed test 'history event received'
#   in t/05event.t at line 139.
t/05event..........NOK 5# Looks like you planned 7 tests but only ran 5. 

# Looks like you failed 2 tests of 5 run.
t/05event..........dubious 

	Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1, 5-7
	Failed 4/7 tests, 42.86% okay
Failed Test Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t/05event.t    2   512     7    6  85.71%  1 5-7
1 test skipped.

Hanspeter

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Alexander Hansen | 14 Jun 2013 16:21
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java on 10.8 and later

The discussion below also applies to 10.8.

-------- Original Message --------
Subject: Re: [fink-seed] 10.9
Date: Fri, 14 Jun 2013 07:06:55 -0700
From: Alexander Hansen <alexanderk.hansen <at> gmail.com>
Organization: Fink Core Team
To: fink ADC/seed NDA list <fink-seed <at> lists.sourceforge.net>
CC: Jack Howarth <howarth <at> bromo.med.uc.edu>

On 6/14/13 6:52 AM, Jack Howarth wrote:

<snip>

> If you execute 'java', the user is directed to Oracle's web site (without
> clear instructions to install either the jre or the jdk). The legacy Java 1.6
> runtime is only installed when you try to execute programs which are already
> linked to that framework. I assume this is the same as current 10.8. One
> problem we may have on both 10.8 and 10.9 is the location of the dylibs in
> the Oracle JDK. Unlike Apple, Oracle doesn't install the JDK as a framework.
> As far as I can tell this results in the the dylibs residing in a path with
> the full java version number embedded in it as described in...
>
> http://docs.oracle.com/javase/7/docs/webnotes/install/mac/mac-jdk.html
> http://docs.oracle.com/javase/7/docs/webnotes/install/mac/mac-install-faq.html
>
> It is unclear to me how executables linked against the shared libs in...
>
> /Library/Java/JavaVirtualMachines/jdk1.7.0_21.jdk/Contents/Home/jre/lib
>
> are supposed to find their shared libs when the jdk gets updated to a
> newer release. It would seem that users need to install both the jre and the
> jdk. As far as I can tell, the JRE installs its dylibs in...
>

According to Oracle, the JDK includes the JRE, and this appears to be
the case on my system, too.

> /Library/Java/Home/bundle/Libraries
>
> whereas the JDK uses the versioned directory...
>
> /Library/Java/JavaVirtualMachines/jdk1.7.0_21.jdk/Contents/Home/jre/lib
>
> and these don't even match up as the same libs. This is very confusing since
> the framework linkage used by JDK 1.6 doesn't clearly indicate which dylibs
> are used to resolve symbols.
>             Jack
>
>

eww, right.  A specific example being:

$ ls -l
/Library/Java/JavaVirtualMachines/jdk1.7.0_21.jdk/Contents/Home/jre/lib/libawt.dylib 

-rwxrwxr-x  1 root  wheel  563940 Apr  7 15:10
/Library/Java/JavaVirtualMachines/jdk1.7.0_21.jdk/Contents/Home/jre/lib/libawt.dylib
$ ls -l /Library/Java/Home/bundle/Libraries/libawt.jnilib
-rwxr-xr-x  1 root  wheel  4652208 Apr 16 14:10
/Library/Java/Home/bundle/Libraries/libawt.jnilib

We've got a current issue on fink about the system-java virtual packages 
for 10.8 related to this, too.  It took me this long to figure out 
_what_ the heck I was actually supposed to download and install so that 
I could actually experience the issue.  This only affects dependencies 
and not actual package builds.
--
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

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Alexander Hansen | 14 Jun 2013 02:23
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ping on git

I'd like to try to move forward on getting the distribution files moved 
over to git.  Right now there is a selfupdate-git branch on fink's 
github repository, but I don't know where we stand on functionality. 
Last time I used it I was able to update from Daniel J's dists/ mirror, 
but I didn't try operations like checking in updates and the like.

Max had proposed at one point using git branches to handle distributions 
instead of the current separate directory trees.  Unfortunately, I don't 
know if at our current manpower levels (especially manpower with 
sufficient knowledge of git) will allow us to implement this in a timely 
manner.  We definitely are going to want to get _something_ in place.

Daniel, if you could reply to this to let folks know how to translate 
the existing CVS repository so that folks can set up their own github 
copies of it to test the ability to check updates in and the like, 
that'd be great.
-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

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Kurt Schwehr | 14 Jun 2013 00:46
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tcltk threading

Any chance that you'd be okay with adding threading to the tcltk client?  I've got a bug in displaying images
in PIL/ImageTk.py that goes away if tcltk is build with --enable-threads?

-kurt
(goatbar)

RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/languages/tcltk-x86_64.info,v
retrieving revision 1.9
diff -r1.9 tcltk-x86_64.info
4c4
< Revision: 1
---
> Revision: 2
30c30
< ConfigureParams: --enable-shared --disable-corefoundation --exec-prefix=%p
--mandir=%p/share/man --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
tcl_cv_type_64bit="long long"
---
> ConfigureParams: --enable-shared --enable-threads --disable-corefoundation --exec-prefix=%p
--mandir=%p/share/man --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
tcl_cv_type_64bit="long long"

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Kurt Schwehr | 12 Jun 2013 17:15
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python packagers - please switch from using distribute back to setuptools

The author of distribute merged distribute back into setuptools 0.7 and took over as lead of setuptools.  Please convert python packages that use distribute back to setuptools.

Just committed setuptools 0.7.2 to 10.[78] and 10.[56].  


Thanks!
-kurt
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Hanspeter Niederstrasser | 12 Jun 2013 12:15

Fink's itk and tklib can't be installed concurrently (file collision)

Hi,

While trying to install Fink's itk and tklib, the following error occurs:

The following 2 packages will be installed or updated:
  itk iwidgets
Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i 
/sw/fink/dists/stable/main/binary-darwin-x86_64/languages/itk_3.4-100_darwin-x86_64.deb
(Reading database ... 318946 files and directories currently installed.)
Unpacking itk (from .../itk_3.4-100_darwin-x86_64.deb) ...
dpkg: error processing 
/sw/fink/dists/stable/main/binary-darwin-x86_64/languages/itk_3.4-100_darwin-x86_64.deb 
(--install):
  trying to overwrite '/sw/share/man/mann/widget.n', which is also in 
package tklib 0.5-1
Errors were encountered while processing:

/sw/fink/dists/stable/main/binary-darwin-x86_64/languages/itk_3.4-100_darwin-x86_64.deb

Hanspeter

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Hanspeter Niederstrasser | 4 Jun 2013 16:29

new netpbm

Dave,

I've posted an update to netpbm on the tracker[1] that updates our 
netpbm from the 'super stable' tree to the newisher 'stable' line.

The primary benefit of this update (besides newer features) is that this 
netpbm release no longer needs the ancient libpng3 (now using libpng14). 
  There are some other minor fixes in there, including putting some 
files into the proper SplitOff.

Let me know what you think.  Thanks,

Hanspeter

[1] https://sourceforge.net/p/fink/package-submissions/4283/

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Jack Howarth | 26 May 2013 22:42
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Re: sundials-2.5.0 build error / gcc47 bug?

Sébastien,
   This is due to fact that -march=native on FSF gcc's compilers will cause the AVX instructions to
be emitted on newer chipsets. These AVX instructions aren't understood by the legacy gnu assembler
used by the FSF gcc compiler. You should be able to work around this issue by appending -mno-avx 
to CFLAGS.
        Jack
ps FYI, the dragonegg-gcc packaging that I will release for llvm 3.3 will automatically pass
-specs=/sw/lib/gcc4.8/lib/integrated-as.specs to the FSF gcc compiler so that the llvm integrated
assembler will be used by FSF gcc rather than the legacy gnu assembler. This should allow the
AVX instructions emitted by -march=native to be usable on darwin when using the dragonegg plugin.

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Jack Howarth | 26 May 2013 22:11
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lcms2-2.4-1

Martin,
   The lcms2 package needs the update to 2.4 and the associated plugin threading patch from Fedora
posted in http://sourceforge.net/p/fink/package-submissions/4269/ in order for ghostscript 9.07
to be buildable in the fink update at http://sourceforge.net/p/fink/package-submissions/4268/.
Thanks in advance for updating lcms2 in the 10.4 and 10.7 trees.
           Jack

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