Urs Holzer | 2 Jul 11:12

Collection of questions

Hi together

I think we should make a collection of all questions we have to answer. 
(Stephen Crawley has posted many questions on this list already.) I am 
not shure how we should do that. Using the mailing list only is perhaps 
not feasible.
The fanciest way would be to create a webpage with all the questions, 
the answers can then be submitted using annotations.
Any other ideas?

Greetings
Urs

Seno Akira | 24 Jun 15:49

about Annotea Server specifications.

Hello,www-annotation members.
I'm looking for strict Annotea server specification.
As trying to implement annotea server,I read "Annotea Prtocols",but I
cannot figure out whole of requests sent by client and replies shoud
be returned for them ,e.g. server should interpret requests about
bookmark ,some query languages like RDQL or SPARQL ,etc.

I think that my implementation should be able to support all features
which supported by the server on http://annotest.w3.org/annotations.
But, I could not find documents which tell about strict server
specifications on annotea still now.

I want to know strict specifications or server implementation policy
about annotest.w3.org/annotations.
Please tell or suggest me about annotea server specifications.

thank you.

Akira SENO

Dan Brickley | 22 May 16:30

[Fwd: Re: Annotea futures? Annotation standards in 2009...]

( Resent after re-subscribing to this list with danbri <at> danbri.org, my 
original msg which bounced was cc: semantic-web <at> w3.org and 
public-annotea-dev <at> w3.org , 
http://lists.w3.org/Archives/Public/semantic-web/2009May/0303.html )

-------- Original Message --------

(I'm cc:'ing 3 lists, rather warily; if the thread gets long, please
consider trimming it to just use semantic-web <at> w3.org)

Hi all

I'm involved in helping advise a new not-for-profit project that is
close in approach to the old Annotea project, looking at annotations
within pieces of Web content, and their cross-linking, threading for
discussion etc. It's now 2009, over ten years since the original Annotea
designs. The Web has changed a lot since then, but the need to annotate
it doesn't seem to have gone away.

See http://annotea.org/
http://www.w3.org/2001/Annotea/User/Tutorial/quicktutorial and nearby
for an overview of Annotea.

Since then Web 2.0 has happened, and now many of the original themes of
Annotea are part of the mainstream Web developer perspective. And yet
... looking at the comments to this 2007 techcrunch survey -
http://www.techcrunch.com/2007/04/10/5-ways-to-mark-up-the-web/ - I see
project after project, startup after startup, exploring this space
without any great emphasis on data exchange standards. I guess many of
them have APIs, probably a lot of them use RSS or Atom feeds. But we
(Continue reading)

Edw1 | 2 May 14:43
Favicon

Extended draft paper submission: EISWT-09 call for papers

Extended draft paper submission: EISWT-09 call for papers This Extended Call for Papers of the 2009 International Conference on Enterprise Information Systems and Web Technologies (EISWT-09) (website: http://www.PromoteResearch.org ) is for those who didn't get a chance to submit the papers for the earlier call for papers. The papers received and accepted in response to this extended call for papers will be included in the final version of the respective conference proceedings. These proceedings will be either ready by the time of the conference (i.e., they will be available during the conference) or soon after the conference (before the end of August 2009), based how fast the proceedings can be prepared. Note: If you have already submitted a paper (whether accepted or rejected or currently under review) for MULTICONF-09, please DO NOT submit that paper again to this extended call for papers. IMPORTANT DATES: Draft paper submission date: May 11, 2009 Acceptance/rejection decision: May 21, 2009 Camera ready paper and copyright and pre-registration due: May 28, 2009 Conference dates: July 13-16, 2009 EISWT-09 will be held during July 13-16 2009 in Orlando, FL, USA. We invite draft paper submissions. The conference will take place at the same time and venue where several other international conferences are taking place. The other conferences include: • International Conference on Artificial Intelligence and Pattern Recognition (AIPR-09) • International Conference on Automation, Robotics and Control Systems (ARCS-09) • International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics (BCBGC-09) • International Conference on High Performance Computing, Networking and Communication Systems (HPCNCS-09) • International Conference on Information Security and Privacy (ISP-09) • International Conference on Recent Advances in Information Technology and Applications (RAITA-09) • International Conference on Software Engineering Theory and Practice (SETP-09) • International Conference on Theory and Applications of Computational Science (TACS-09) • International Conference on Theoretical and Mathematical Foundations of Computer Science (TMFCS-09) The website http://www.PromoteResearch.org contains more details. Sincerely John Edward Publicity committee

View this message in context: Extended draft paper submission: EISWT-09 call for papers
Sent from the w3.org - www-annotation mailing list archive at Nabble.com.
Wendy L. | 23 Mar 16:25

W3C standard Annotea / Open Source ECM

Hi,

I recently came across the W3C standard Annotea. This format was being suggested because Nuxeo/ECM allowed for ease of use and little programming efforts. They played well together.  Are other W3C standards under discussions similar to Annotea where they play well with other open source ECM’s or is there encouragement to use W3C standards as a way to make open source more interoperable? I would like to be knowledgeable of these types of initiatives so I can look at my schemas and DTDs and see where efforts can be reduced with our programming staff.

 

Thanks

-datatomato!

Amandeep Sidhu | 27 Feb 06:45

CFP: 4th Special Track on Ontologies for Biomedical Systems at 22nd IEEE CBMS 2009

CALL FOR PAPERS
----------
4th Special Track on Ontologies for Biomedical Systems
3-4 August 2009
Albuquerque, New Mexico

http://cbms09.biomap.org/

22nd IEEE International Symposium on Computer-Based Medical Systems

http://cvial.ee.ttu.edu/cbms2009/
----------

Biomedical Ontologies have developed in an uncoordinated way, often reflecting mere relations of 'association' between what are called 'concepts', and serving primarily the purposes of information extraction from on-line biomedical literature and databases. In recent years, we have learned a great deal about the criteria which must be satisfied if ontology is to allow true information integration and automatic reasoning across data and information derived from different sources. The goal of this track is to survey existing biomedical ontologies and reform them in such a way as to allow true information integration in biomedical domain. Authors are invited to submit original papers exploring the theories, techniques, and applications of biomedical ontologies. Papers are invited (but not limited) to the following themes:

* Biomedical Ontologies for Genetics, Proteomics, Diseases, Privacy etc
* Conceptual Models for Biological and Medical Data
* Semantics in Biological Data Modeling
* Use of semantics to manage Interoperation in Biomedical Databases
* Semantic Web technologies and formalisms for Biomedical Data
* Ontology representation and exchange languages for bioinformatics
* Biomedical Ontologies and OWL
* Biological Data Integration and Management using Ontologies
* Biomedical Data Engineering using Ontologies
* Application of Biomedical Ontologies for Heterogeneous Database Access
* Query Optimization Techniques for Biomedical Database using Ontologies
* Support of Ontologies for Biological Information Retrieval and Web Services
* Change Management in Biomedical Ontologies
* Tools for Development and Management of Biomedical Ontologies

PAPER SUBMISSION:

No hardcopy submissions are being accepted. Electronic submissions of original technical research papers will only be accepted in PDF format. Use a maximum of 6 pages IEEE two-column format, including figures and references. All submissions will be done electronically via the CBMS 2009 web submission system (http://www.easychair.org/conferences/?conf=ieeecbms2009). Select the track "Ontologies for Biomedical Systems", provide the information about the paper title, authors, keywords, and corresponding author's information (telephone, fax, mailing address, e-mail address). Please note that author names should not appear on the paper. Submission implies the willingness of at least one of the authors to register and present the paper at the CBMS 2009 Symposium. All papers will be peer reviewed by at least two independent referees. All accepted papers will be included in the conference proceedings. Selected papers from the track will be published in Special Issue of International Journal of Healthcare Information Systems and Informatics (IJHISI) in 2010.

IMPORTANT DATES:

April 1, 2009     Paper Submission Due
May 25, 2009     Notification of acceptance
June 21, 2009     Final camera-ready paper due
June 21, 2009     Pre-registration deadline

You must pre-register to have your paper published in the proceedings. If you only plan to attend and are not submitting a paper, pre-registration is still strongly encouraged.

TRACK CHAIRS:

Amandeep S. Sidhu
WA Centre for Comparative Genomics, Murdoch University, Perth, Australia

Matthew I. Bellgard
WA Centre for Comparative Genomics, Murdoch University, Perth, Australia

Jake Chen
Indiana University - Purdue University, Indianapolis, USA

For further questions, please contact technical program chair at: cbms <at> biomap.org
----------

Amandeep Sidhu | 1 Feb 17:08

CFP: Special Track on SOA for Data Streams in Healthcare with 22nd IEEE CBMS 2009

CALL FOR PAPERS
----------
Special Track on SOA for Data Streams in Healthcare
3-4 August 2009
Albuquerque, New Mexico

http://sdsh09.biomap.org/

22nd IEEE International Symposium on Computer-Based Medical Systems

http://cvial.ee.ttu.edu/cbms2009/
----------

The aging population phenomenon together with community based care models is driving the need for healthcare to seek support for the capture, collection, transmission, real time assessment, storage and data mining of data presented as data streams. A plethora of medical devices in healthcare facilities, within the home and even within clothing is generating data streams at frequencies up to 1000 readings a second. Services Computing has been described as a cross-discipline that covers the science and technology of bridging the gap between Business Services and IT Services supported by Web services and service-oriented architecture (SOA), transformation and integration. Healthcare is often perceived to lag behind other industry sectors in its uptake and adoption of new technology. Opportunities abound for the unique aspects of data stream models in healthcare to drive fundamental computing and IT research together with leading applied research within the healthcare domain.

This special track invites papers with research contributions in the domain of Services Oriented Architectures for Data Streams in Healthcare. The topics include but are not limited to:

* Trends and Challenges of SOA for Data Streams in Healthcare
* Barriers to adoption of SOA for Data Streams in Healthcare
* SOA for Data Streams in Healthcare Methodologies
* Legal and Regulatory requirements concerning SOA for Data Streams in Healthcare
* New models of healthcare delivery supported by SOA for Data Streams in Healthcare
* Services performance issues (e.g. Availability, Reliability and Security)
* Management and monitoring of SOA for Data Streams in Healthcare
* The integration of patient journey modeling with SOA for Data Streams in Healthcare
* Case Studies in SOA for Data Streams in Healthcare 

PAPER SUBMISSION:

No hardcopy submissions are being accepted. Electronic submissions of original technical research papers will only be accepted in PDF format. Use a maximum of 6 pages IEEE two-column format, including figures and references. All submissions will be done electronically via the CBMS 2009 web submission system (http://www.easychair.org/conferences/?conf=ieeecbms2009). Select the track "SOA for Data Streams in Healthcare", provide the information about the paper title, authors, keywords, and corresponding author's information (telephone, fax, mailing address, e-mail address). Please note that author names should not appear on the paper. Submission implies the willingness of at least one of the authors to register and present the paper at the CBMS 2009 Symposium. All papers will be peer reviewed by at least two independent referees. All accepted papers will be included in the conference proceedings. Selected papers from the track will be published in Special Issue of International Journal of Healthcare Information Systems and Informatics (IJHISI) in 2010.

IMPORTANT DATES:

April 1, 2009     Paper Submission Due
May 25, 2009     Notification of acceptance
June 21, 2009     Final camera-ready paper due
June 21, 2009     Pre-registration deadline

You must pre-register to have your paper published in the proceedings. If you only plan to attend and are not submitting a paper, pre-registration is still strongly encouraged.

TRACK CHAIRS:

Carolyn McGregor
Canada Research Chair in Health Informatics, University of Ontario Institute of Technology, Canada

Amandeep S. Sidhu
WA Centre for Comparative Genomics, Murdoch University, Perth, Australia

Matthew I. Bellgard
WA Centre for Comparative Genomics, Murdoch University, Perth, Australia

For further questions, please contact technical program chair at: cbms <at> biomap.org
----------

Amandeep Sidhu | 1 Feb 16:38

CFP: 4th Special Track on Ontologies for Biomedical Systems

CALL FOR PAPERS
----------
4th Special Track on Ontologies for Biomedical Systems
3-4 August 2009
Albuquerque, New Mexico

http://cbms09.biomap.org/

22nd IEEE International Symposium on Computer-Based Medical Systems

http://cvial.ee.ttu.edu/cbms2009/
----------

Biomedical Ontologies have developed in an uncoordinated way, often reflecting mere relations of 'association' between what are called 'concepts', and serving primarily the purposes of information extraction from on-line biomedical literature and databases. In recent years, we have learned a great deal about the criteria which must be satisfied if ontology is to allow true information integration and automatic reasoning across data and information derived from different sources. The goal of this track is to survey existing biomedical ontologies and reform them in such a way as to allow true information integration in biomedical domain. Authors are invited to submit original papers exploring the theories, techniques, and applications of biomedical ontologies. Papers are invited (but not limited) to the following themes:

* Biomedical Ontologies for Genetics, Proteomics, Diseases, Privacy etc
* Conceptual Models for Biological and Medical Data
* Semantics in Biological Data Modeling
* Use of semantics to manage Interoperation in Biomedical Databases
* Semantic Web technologies and formalisms for Biomedical Data
* Ontology representation and exchange languages for bioinformatics
* Biomedical Ontologies and OWL
* Biological Data Integration and Management using Ontologies
* Biomedical Data Engineering using Ontologies
* Application of Biomedical Ontologies for Heterogeneous Database Access
* Query Optimization Techniques for Biomedical Database using Ontologies
* Support of Ontologies for Biological Information Retrieval and Web Services
* Change Management in Biomedical Ontologies
* Tools for Development and Management of Biomedical Ontologies

PAPER SUBMISSION:

No hardcopy submissions are being accepted. Electronic submissions of original technical research papers will only be accepted in PDF format. Use a maximum of 6 pages IEEE two-column format, including figures and references. All submissions will be done electronically via the CBMS 2009 web submission system (http://www.easychair.org/conferences/?conf=ieeecbms2009). Select the track "Ontologies for Biomedical Systems", provide the information about the paper title, authors, keywords, and corresponding author's information (telephone, fax, mailing address, e-mail address). Please note that author names should not appear on the paper. Submission implies the willingness of at least one of the authors to register and present the paper at the CBMS 2009 Symposium. All papers will be peer reviewed by at least two independent referees. All accepted papers will be included in the conference proceedings. Selected papers from the track will be published in Special Issue of International Journal of Healthcare Information Systems and Informatics (IJHISI) in 2010.

IMPORTANT DATES:

April 1, 2009     Paper Submission Due
May 25, 2009     Notification of acceptance
June 21, 2009     Final camera-ready paper due
June 21, 2009     Pre-registration deadline

You must pre-register to have your paper published in the proceedings. If you only plan to attend and are not submitting a paper, pre-registration is still strongly encouraged.

TRACK CHAIRS:

Amandeep S. Sidhu
WA Centre for Comparative Genomics, Murdoch University, Perth, Australia

Matthew I. Bellgard
WA Centre for Comparative Genomics, Murdoch University, Perth, Australia

Jake Chen
Indiana University - Purdue University, Indianapolis, USA

For further questions, please contact technical program chair at: cbms <at> biomap.org
----------

Stephen Crawley | 29 Jan 05:13
Favicon

Bug in W3C Annotea service


The Annotea spec defines the query to get replies to an annotation to be
"w3c_reply_tree".  Unfortunately, the W3C Annotea server uses
"w3c_replyTree".  This is a bug, and should be corrected in an upwards
compatible fashion.

Some Annotea clients (e.g. Annozilla) have been implemented against the
W3C Annotea server's behavior rather than the spec.  Others (e.g. the
WAINU library) implement the spec.  This means that Annotea servers need
to implement both versions of the request to support the range of
clients.  This probably should be mentioned in the Annotea spec as
"implementation advice".

-- Steve

Stephen Crawley | 23 Jan 04:39
Favicon

Re: Comments on the draft W3C Annotatea specification


And my sharp eyed colleague has just spotted another on:

27) There is a mistake in the example in section 3.1

<r:RDF xmlns:r="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
       xmlns:a="http://www.w3.org/2000/10/annotation-ns#"
       xmlns:d="http://purl.org/dc/elements/1.1/"
       xmlns:tr="http://www.w3.org/2001/03/thread#"
       xmlns:h="http://www.w3.org/1999/xx/http#"
       xmlns:rt:"http://www.w3.org/2001/12/replyType">

The last xmlns declaration is missing a '#' after 'replyType'.  Actually,
this particular xmlns declaration defines a prefix that is not used in the
example and could therefore be deleted entirely.

Stephen Crawley | 6 Jan 05:50
Favicon

Re: Comments on the draft W3C Annotatea specification


And another:

26)  Section 2.4 specifies how PUT is used to update an annotation.  
The example shows the replacement annotation RDF having a subject 
URI; i.e.

<r:Description
r:about="http://annotea.example.org/Annotation/3ACF6D754">
...

The spec does not say if the subject URI is mandatory.  It also
does not state that the URI (if present) needs to match the 
URI in the request.  The same comment applies to Section 3.4.


Gmane