Is there a molecular biology suite project?
2009-01-14 15:14:27 GMT
I am a post doc at the Dundee University, in Scottland, UK. I mainly do genetics and I need to be able to see, edit and align .abi files which are DNA sequence chromatogram files. In our lab, we used to use vector NTI from invitrogen (http://www.invitrogen.com/site/us/en/home/LINNEA-Online-Guides/LINNEA-Communities/Vector-NTI-Community/Vector-NTI.html) which was free for academy up to the last release... I never liked this software but it was the one used in the lab, so... I usually use the APE software (http://www.biology.utah.edu/jorgensen/wayned/ape/) but it can't align multiple DNA sequence chromatograms, neither edit them... I was wondering if there was a project that you know of aiming at developping this kind of software or even a more complete one, since I think that there is no really user friendly, complete and free (as in freedom) such software. I have been talking with my boss and some collegues, and there should be a possibility to look and hoppefully get some funding for such project that could involve many different labs (as far I know, most of the labs doing a bit of molecular biology would be interested, and that means a lot of labs)!
Thanks a lot for your time.
Looking forward reading you
Pablo Ibáñez Cruceyra, PhD
Dr. Anton Gartner Lab
Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
The University of Dundee
Dundee DD1 5EH
E-mail: P.Ibanezcruceyra <at> dundee.ac.uk
Office Phone: +44 (0) 1382-386 328
Lab Phone: +44 (0) 1382-386 326
Fax: +44 (0) 1382-388 072
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