Thomas Kahle | 27 Jan 12:36 2016
Picon
Gravatar

Singular in sage-on-gentoo

Hi,

Can somebody from sage-on-gentoo please check
https://bugs.gentoo.org/show_bug.cgi?id=572626
This is a build failure with the sage-on-gentoo version of singular that
was assigned to me.  Maybe the metadata in sage-on-gentoo should be
fixed too.  I don't really feel responsible for this branch.

Cheers,
Thomas

--

-- 
Thomas Kahle
http://dev.gentoo.org/~tomka/

Jauhien Piatlicki | 12 Jan 22:25 2016
Picon
Gravatar

Re: [Herwig] Herwig 7.0.0 release

Hi David,

thank you very much for answer. I will proceed this way.

Regards,
Jauhien

On 01/11/2016 10:35 AM, David Grellscheid wrote:
> Hi Jauhien,
> 
> The package should certainly be called just Herwig from now on. I don't
> know the Gentoo system well, but is it possible to do a transitional
> meta-package Herwig++-3.0.0 that only has a hard requirement on
> Herwig-7.0.0? This would help users with the transition.
> 
> Thanks,
> 
>   David
> 
> 
> On 03/01/2016 11:33, Jauhien Piatlicki wrote:
>> Hi,
>>
>> Herwig 7.0.0 has been released recently: https://herwig.hepforge.org/
>> http://arxiv.org/abs/1512.01178. Its code base is a direct development
>> of the Herwig++ code, but the name was changed to Herwig, as Herwig++
>> completely replaces old HERWIG now.
>>
>> The question is under what name should we package it now and how to
>> proceed, so users get the expected updates?
(Continue reading)

Justin Lecher (jlec | 7 Jan 14:50 2016
Picon
Gravatar

packages to grab


Dear everyone,

due to changes in real life I need to cut back vastly my day to day
maintainer work starting in February. So far I have no clue how much
time I can devote to Gentoo in nearer future.

I will move all packages I maintain [1] to the associated projects if
possible. All devs are free to take what ever you are interested in. I
am also happy to proxy contributors if they like to maintain a package.

My plan is to focus more on task which I can handle more flexible.

Regarding the projects I am involved in I have the following ideas:

_Recruiters_

We are again actively looking for someone who is doing the review
session. The candidate should have solid knowledge about the various
aspects for Gentoo reaching from packaging to institutional aspects.
Further, you should be able to work with inexperienced contributors
and have fun teaching the necessary bits.

Secondly, I would like to work strategically on our recruitment
process. This includes reworking of the quizzes and a general
assessment of the process as well as new options. We won't change
anything over night, but I really think we can do simpler and better.

In case you are interested in either topic, feel free to drop a mail
to recruiters <at> gentoo.org.
(Continue reading)

Jauhien Piatlicki | 3 Jan 12:33 2016
Picon
Gravatar

Herwig 7.0.0 release

Hi,

Herwig 7.0.0 has been released recently: https://herwig.hepforge.org/
http://arxiv.org/abs/1512.01178. Its code base is a direct development
of the Herwig++ code, but the name was changed to Herwig, as Herwig++
completely replaces old HERWIG now.

The question is under what name should we package it now and how to
proceed, so users get the expected updates?

--
Jauhien

marco restelli | 3 Dec 14:47 2015
Picon

File collision with mpich under empi

Hi,
   I have installed mpich (sys-cluster/mpich-3.1.4-r1, with uses cxx,
fortran, mpi-threads, romio, -doc, -threads) and I would also like
having the same MPI implementation under "eselect mpi", using empi as
described here:

https://wiki.gentoo.org/wiki/Empi

The problem is that if I do

/usr/bin/empi --create --class mpi-mpich sys-cluster/mpich

I see the following file collisions:

 * Detected file collision(s):
 *
 * 	/usr/share/doc/mpich-3.1.4-r1/README.bz2
 * 	/usr/share/doc/mpich-3.1.4-r1/README.envvar.bz2
 * 	/usr/share/doc/mpich-3.1.4-r1/CHANGES.bz2

Removing those 3 files fixes the problem, until the next emerge.

Marco

Fran├žois Bissey | 1 Dec 01:56 2015
Picon

lapack 3.6.0 harmful for scipy

So lapack 3.6.0 landed while I wasn't looking.
scipy (0.16.1) doesn't like it:
ldd -r /usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so
         linux-vdso.so.1 (0x00007fff84da2000)
         libopenblas_threads.so.0 => /usr/lib64/libopenblas_threads.so.0 
(0x00007f5ac2513000)
         libreflapack.so.3 => /usr/lib64/libreflapack.so.3 
(0x00007f5ac1d4d000)
         libpython2.7.so.1.0 => /usr/lib64/libpython2.7.so.1.0 
(0x00007f5ac198e000)
         libc.so.6 => /lib64/libc.so.6 (0x00007f5ac15f3000)
         libm.so.6 => /lib64/libm.so.6 (0x00007f5ac12ee000)
         libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f5ac10d2000)
         libgfortran.so.3 => 
/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/libgfortran.so.3 (0x00007f5ac0daa000)
         libgcc_s.so.1 => 
/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/libgcc_s.so.1 (0x00007f5ac0b92000)
         libdl.so.2 => /lib64/libdl.so.2 (0x00007f5ac098e000)
         libutil.so.1 => /lib64/libutil.so.1 (0x00007f5ac078b000)
         /lib64/ld-linux-x86-64.so.2 (0x00007f5ac2da9000)
         libquadmath.so.0 => 
/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/libquadmath.so.0 (0x00007f5ac054c000)
undefined symbol: sgegv_ 
(/usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so)
undefined symbol: dgegv_ 
(/usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so)
undefined symbol: cgegv_ 
(/usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so)
undefined symbol: zgegv_ 
(/usr/lib64/python2.7/site-packages/scipy/linalg/_flapack.so)
(Continue reading)

Frederico Moraes Ferreira | 23 Nov 13:15 2015
Picon
Picon

gnome-terminal tab height

Hi there,
Has anybody happen to know how to decrease the ugly tab height of the 
gnome-terminal?
I've seem some guys editing the ~/.config/gtk-3.0/gtk.css for decrease 
the gnome-terminal title-bar, but i would like to change the tab height.
If you know how, please, drop me a line.

PS: for gnome-terminal-3.16.2-r2

Frederico Moraes Ferreira | 6 Nov 14:53 2015
Picon
Picon

R-3.2.2 and libblas

Hi there,
Has anybody experienced such libblas issue? Looks like there are some 
Bioconductor packages need it to compile.

Thanks in advance.
Fred

mephisto ~ #R
 > install.packages("DESeq2")
...
...

* installing *source* package 'DESeq2' ...
** libs
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG 
-I"/usr/lib64/R/library/Rcpp/include" 
-I"/usr/lib64/R/library/RcppArmadillo/include"   -fpic -march=native  -c 
DESeq2.cpp -o DESeq2.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG 
-I"/usr/lib64/R/library/Rcpp/include" 
-I"/usr/lib64/R/library/RcppArmadillo/include"   -fpic -march=native  -c 
RcppExports.cpp -o RcppExports.o
x86_64-pc-linux-gnu-g++ -shared -L/usr/lib64/R/lib -Wl,--as-needed -o 
DESeq2.so DESeq2.o RcppExports.o -L/usr/lib64/R/lib -lRlapack 
-L/usr/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR
installing to /usr/lib64/R/library/DESeq2/libs
** R
** inst
** preparing package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) :
(Continue reading)

marco restelli | 15 Oct 16:51 2015
Picon

Problem in the configuration files for petsc-3.6.0

Dear all,
   installing petsc-3.6.0, the configuration file
/usr/include/petsc/conf/variables contains the path (last row)

include ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/petscvariables

while the correct one should be

include ${PETSC_DIR}/${PETSC_ARCH}/conf/petscvariables

so that it points to the file

/usr/include/petsc/linux-gnu-cxx-opt/conf/petscvariables

I am using

# equery uses petsc
[ Legend : U - final flag setting for installation]
[        : I - package is installed with flag     ]
[ Colors : set, unset                             ]
 * Found these USE flags for sci-mathematics/petsc-3.6.0:
 U I
 + + X               : Add support for X11
 - - afterimage      : Use Afterstep image library (media-libs/libafterimage)
 - - boost           : Use boost (dev-libs/boost)
 - - complex-scalars : Make scalars complex
 + + cxx             : Build support for C++ (bindings, extra
libraries, code generation, ...)
 + - debug           : Enable extra debug codepaths, like asserts and
extra output. If you want to get meaningful backtraces see
(Continue reading)

Nicolas Bock | 14 Oct 13:50 2015
Picon

Re: ChangeLog in the overlay

Hi Marius,

thanks for the details! I noticed that lately repoman is adding the
category/package name at the beginning of the commit message. Good to
know about the --echangelog=n option.

Thanks again!

Nick

On Wed, Oct 14, 2015 at 12:16 AM, Marius Brehler
<marbre <at> linux.sungazer.de> wrote:
>
>
> On 10/13/2015 10:50 PM, Nicolas Bock wrote:
>> On Tue, Oct 13, 2015 at 2:42 PM, Marius Brehler
>> <marbre <at> linux.sungazer.de> wrote:
>>> On 10/13/2015 02:08 PM, Nicolas Bock wrote:
>>>> [..]
>>>> Hi Marius,
>>>>
>>>> out of curiosity: What does the -t option do? And how does one
>>>> re-commit a change using repoman?
>>>>
>>>> Thanks,
>>>>
>>>> Nick
>>>
>>>
>>> Hi,
(Continue reading)

Nicolas Bock | 13 Oct 22:50 2015
Picon

Re: ChangeLog in the overlay

On Tue, Oct 13, 2015 at 2:42 PM, Marius Brehler
<marbre <at> linux.sungazer.de> wrote:
> On 10/13/2015 02:08 PM, Nicolas Bock wrote:
>> On Mon, Oct 12, 2015 at 4:58 AM, Marius Brehler
>> <marbre <at> linux.sungazer.de> wrote:
>>>
>>>
>>> On 10/10/2015 12:35 PM, Justin Lecher (jlec) wrote:
>>>> Hi everyone,
>>>>
>>>> What is your opinion on dropping the ChangeLog in the overlay in
>>>> favour of the git log as it has been done in the tree?
>>>>
>>>> Justin
>>>>
>>>
>>> Hi,
>>> I prefer to drop the ChangeLogs. Since we give a lot advices and many
>>> contributes push their changes incremental without using 'repo-commit
>>> -t', or re-commit changed ebuilds, ChangeLogs often blow up. For example
>>> see [1], which is AFAIR not the worst one.
>>> Regards
>>>
>> Hi Marius,
>>
>> out of curiosity: What does the -t option do? And how does one
>> re-commit a change using repoman?
>>
>> Thanks,
>>
(Continue reading)


Gmane