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Andreas Tille | 25 May 15:19
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r11010 - trunk/packages/grogui/trunk/debian

Author: tille
Date: 2012-05-25 13:19:36 +0000 (Fri, 25 May 2012)
New Revision: 11010

Modified:
   trunk/packages/grogui/trunk/debian/control
Log:
Take over better description from task file

Modified: trunk/packages/grogui/trunk/debian/control
===================================================================
--- trunk/packages/grogui/trunk/debian/control	2012-05-25 13:17:41 UTC (rev 11009)
+++ trunk/packages/grogui/trunk/debian/control	2012-05-25 13:19:36 UTC (rev 11010)
@@ -9,6 +9,15 @@
 Package: grogui
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: <insert up to 60 chars description>
+Description: graphical user interface for popular molecular dynamics package GROMACS
  Gromacs GUI is a Qt4-based graphical user interface for widely used molecular
  dynamics package, GROMACS.
+ .
+  1. File browsing and management with customizable right-click pop up menu.
+  2. Graphical interfaces for GROMACS commands (currently 21 commands have their own interfaces).
+  3. Plot drawing tool which can export plots to pdf.
+  4. A simple built-in console.
+  5. Built-in GROMACS manual viewer.
+  6. Built-in file editor with syntax highlighting for some GROMACS file formats (currently only mdp
format is supported).
+  7. MDP Writer section to easily create your mdp files.
(Continue reading)

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Andreas Tille | 25 May 15:17
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r11009 - trunk/packages/grogui/trunk/debian

Author: tille
Date: 2012-05-25 13:17:41 +0000 (Fri, 25 May 2012)
New Revision: 11009

Modified:
   trunk/packages/grogui/trunk/debian/copyright
Log:
DEP5

Modified: trunk/packages/grogui/trunk/debian/copyright
===================================================================
--- trunk/packages/grogui/trunk/debian/copyright	2012-05-25 12:49:42 UTC (rev 11008)
+++ trunk/packages/grogui/trunk/debian/copyright	2012-05-25 13:17:41 UTC (rev 11009)
@@ -1,40 +1,30 @@
-This package was debianized by:
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Gromacs GUI
+Source: http://kde-apps.org/content/show.php/Gromacs+GUI+?content=47665

-    Steffen Moeller <moeller <at> debian.org> on Sun, 23 Nov 2008 23:38:26 +0100
+Files: *
+Copyright: © 2008 Reza Salari <resal81 <at> yahoo.com>
+License: GPL-2+

-It was downloaded from:
+Files: debian/*
+Copyright: © 2008 Steffen Moeller <moeller <at> debian.org>
+License: GPL-2+

-    http://resal.wordpress.com/gromacs-gui/
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Andreas Tille | 25 May 14:49
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r11008 - in trunk/packages/libhmsbeagle/trunk/debian: . patches

Author: tille
Date: 2012-05-25 12:49:42 +0000 (Fri, 25 May 2012)
New Revision: 11008

Removed:
   trunk/packages/libhmsbeagle/trunk/debian/patches/do_not_build_unused_plugin.patch
Modified:
   trunk/packages/libhmsbeagle/trunk/debian/changelog
   trunk/packages/libhmsbeagle/trunk/debian/patches/enable_static.patch
   trunk/packages/libhmsbeagle/trunk/debian/patches/series
Log:
Restore preparation for new upstream version - waiting for answer from upstream

Modified: trunk/packages/libhmsbeagle/trunk/debian/changelog
===================================================================
--- trunk/packages/libhmsbeagle/trunk/debian/changelog	2012-05-25 12:48:02 UTC (rev 11007)
+++ trunk/packages/libhmsbeagle/trunk/debian/changelog	2012-05-25 12:49:42 UTC (rev 11008)
@@ -1,3 +1,12 @@
+libhmsbeagle (1.1-1) UNRELEASED; urgency=low
+
+  * New upstream release
+     - debian/patches/disable_cpu_sse_plugin.patch:  Seems upstream
+       has solved the problem a bit differently than in this patch
+       -> droping it for the moment
+
+ -- Andreas Tille <tille <at> debian.org>  Fri, 25 May 2012 14:48:52 +0200
+
 libhmsbeagle (1.0-6) unstable; urgency=low

   * debian/upstream:
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Andreas Tille | 25 May 14:48
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r11007 - in trunk/packages/libhmsbeagle/trunk/debian: . patches

Author: tille
Date: 2012-05-25 12:48:02 +0000 (Fri, 25 May 2012)
New Revision: 11007

Added:
   trunk/packages/libhmsbeagle/trunk/debian/patches/do_not_build_unused_plugin.patch
Modified:
   trunk/packages/libhmsbeagle/trunk/debian/changelog
   trunk/packages/libhmsbeagle/trunk/debian/patches/enable_static.patch
   trunk/packages/libhmsbeagle/trunk/debian/patches/series
Log:
Override unconfirmed NMU with current changes in SVN; upgrade to new version needs more communication
with upstream and is thus delayed; also delayed hardening

Modified: trunk/packages/libhmsbeagle/trunk/debian/changelog
===================================================================
--- trunk/packages/libhmsbeagle/trunk/debian/changelog	2012-05-25 12:29:48 UTC (rev 11006)
+++ trunk/packages/libhmsbeagle/trunk/debian/changelog	2012-05-25 12:48:02 UTC (rev 11007)
@@ -1,9 +1,5 @@
-libhmsbeagle (1.1-1) UNRELEASED; urgency=low
+libhmsbeagle (1.0-6) unstable; urgency=low

-  * New upstream release
-     - debian/patches/disable_cpu_sse_plugin.patch:  Seems upstream
-       has solved the problem a bit differently than in this patch
-       -> droping it for the moment
   * debian/upstream:
      - Make authors BibTeX compliant
      - Add some publication info (volume, number, pages)
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Olivier Sallou | 25 May 14:29
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r11006 - trunk/packages/libforester-java/trunk/debian

Author: osallou
Date: 2012-05-25 12:29:48 +0000 (Fri, 25 May 2012)
New Revision: 11006

Modified:
   trunk/packages/libforester-java/trunk/debian/control
Log:
fix dependency name

Modified: trunk/packages/libforester-java/trunk/debian/control
===================================================================
--- trunk/packages/libforester-java/trunk/debian/control	2012-05-25 12:26:45 UTC (rev 11005)
+++ trunk/packages/libforester-java/trunk/debian/control	2012-05-25 12:29:48 UTC (rev 11006)
@@ -23,7 +23,7 @@
 Package: libforester-java
 Architecture: all
 Depends: ${misc:Depends},
- libcommons-codec, libitext-java
+ libcommons-codec-java, libitext-java
 Description: Libraries for evolutionary biology and comparative genomics research
  Forester is a library of Java software for phylogenomics 
  and evolutionary biology research. It can be used to read or
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Olivier Sallou | 25 May 14:26
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r11005 - trunk/packages/libforester-java/trunk/debian

Author: osallou
Date: 2012-05-25 12:26:45 +0000 (Fri, 25 May 2012)
New Revision: 11005

Modified:
   trunk/packages/libforester-java/trunk/debian/control
Log:
fix dependency name

Modified: trunk/packages/libforester-java/trunk/debian/control
===================================================================
--- trunk/packages/libforester-java/trunk/debian/control	2012-05-25 12:12:50 UTC (rev 11004)
+++ trunk/packages/libforester-java/trunk/debian/control	2012-05-25 12:26:45 UTC (rev 11005)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 Uploaders: Olivier Sallou <osallou <at> debian.org>
 Build-Depends: debhelper (>= 8.0.0),
- default-jdk, junit4, javahelper (>=0.25), libcommons-codec, libitext-java
+ default-jdk, junit4, javahelper (>=0.25), libcommons-codec-java, libitext-java
 Standards-Version: 3.9.3
 Homepage: http://code.google.com/p/forester
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/forester/trunk/
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Andreas Tille | 25 May 14:12
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r11004 - trunk/packages/fasttree/trunk/debian

Author: tille
Date: 2012-05-25 12:12:50 +0000 (Fri, 25 May 2012)
New Revision: 11004

Modified:
   trunk/packages/fasttree/trunk/debian/copyright
Log:
DEP5

Modified: trunk/packages/fasttree/trunk/debian/copyright
===================================================================
--- trunk/packages/fasttree/trunk/debian/copyright	2012-05-25 12:07:10 UTC (rev 11003)
+++ trunk/packages/fasttree/trunk/debian/copyright	2012-05-25 12:12:50 UTC (rev 11004)
@@ -1,10 +1,8 @@
-Format: http://dep.debian.net/deps/dep5
-Upstream-Name: fasttree
-Source: <url://example.com>
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: FastTree
+Source: http://www.microbesonline.org/fasttree/#Install

 Files: *
-Copyright: <years> <put author's name and email here>
-           <years> <likewise for another author>
 Copyright: (C) 2008-2009 The Regents of the University of California
 License: GPL-2.0+

@@ -29,13 +27,3 @@
  On Debian systems, the complete text of the GNU General
  Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
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Andreas Tille | 25 May 14:07
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r11003 - trunk/packages/ecell/trunk/debian

Author: tille
Date: 2012-05-25 12:07:10 +0000 (Fri, 25 May 2012)
New Revision: 11003

Modified:
   trunk/packages/ecell/trunk/debian/copyright
Log:
Pseudo-DEP5 to enable machine-readable gatherer fetch license

Modified: trunk/packages/ecell/trunk/debian/copyright
===================================================================
--- trunk/packages/ecell/trunk/debian/copyright	2012-05-25 12:02:58 UTC (rev 11002)
+++ trunk/packages/ecell/trunk/debian/copyright	2012-05-25 12:07:10 UTC (rev 11003)
@@ -1,10 +1,11 @@
-This package was debianized by Steffen Moeller <moeller <at> unknown> on
-Wed, 10 Mar 2004 22:08:00 +0100.
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: E-Cell
+Source: https://github.com/ecell/ecell.github.com

-It was downloaded from <fill in ftp site>
+Files: *
+Copyright: © -2003 ???
+License: GPL

-Upstream Author(s): <put author(s) name and email here>
-
-Copyright:
-
-<Must follow here>
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Andreas Tille | 25 May 14:02
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r11002 - trunk/packages/ecell/trunk/debian

Author: tille
Date: 2012-05-25 12:02:58 +0000 (Fri, 25 May 2012)
New Revision: 11002

Modified:
   trunk/packages/ecell/trunk/debian/control
Log:
Team maintained package

Modified: trunk/packages/ecell/trunk/debian/control
===================================================================
--- trunk/packages/ecell/trunk/debian/control	2012-05-25 11:48:20 UTC (rev 11001)
+++ trunk/packages/ecell/trunk/debian/control	2012-05-25 12:02:58 UTC (rev 11002)
@@ -1,7 +1,9 @@
 Source: ecell
 Section: science
 Priority: optional
-Maintainer: Steffen Moeller <moeller <at> pzr.uni-rostock.de>
+Maintainer: Debian Med Packaging Team <debian-med-packaging <at> lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Steffen Moeller <moeller <at> pzr.uni-rostock.de>
 Build-Depends: debhelper (>= 4.0.0), python-numpy, python-dev, python-gtk2, python-glade2, g++ (>=
3.3), libgsl0-dev, libboost-python-dev, automake, autoconf, libtool, python-gnome2, expect,
doxygen, graphviz, docbook-utils, ghostscript, docbook-to-man
 Standards-Version: 3.6.0
 Homepage: http://www.e-cell.org/
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Andreas Tille | 25 May 13:48
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r11001 - in trunk/packages: . logomat-m logomat-m/trunk logomat-m/trunk/debian

Author: tille
Date: 2012-05-25 11:48:20 +0000 (Fri, 25 May 2012)
New Revision: 11001

Added:
   trunk/packages/logomat-m/
   trunk/packages/logomat-m/trunk/
   trunk/packages/logomat-m/trunk/debian/
   trunk/packages/logomat-m/trunk/debian/changelog
   trunk/packages/logomat-m/trunk/debian/compat
   trunk/packages/logomat-m/trunk/debian/control
   trunk/packages/logomat-m/trunk/debian/copyright
   trunk/packages/logomat-m/trunk/debian/upstream
Log:
Inject data from med-bio task file as machine readable packaging files to enable machine-readable
gatherer fetching it

Added: trunk/packages/logomat-m/trunk/debian/changelog
===================================================================
--- trunk/packages/logomat-m/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/logomat-m/trunk/debian/changelog	2012-05-25 11:48:20 UTC (rev 11001)
@@ -0,0 +1,5 @@
+logomat-m (0.0.20091119-1) unstable; urgency=low
+
+  * Initial release
+
+ -- Andreas Tille <tille <at> debian.org>  Thu, 24 May 2012 14:30:13 +0200

Added: trunk/packages/logomat-m/trunk/debian/compat
===================================================================
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Mathieu Malaterre | 25 May 11:51
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r11000 - in trunk/packages/dcmtk/trunk/debian: . patches

Author: malat
Date: 2012-05-25 09:51:25 +0000 (Fri, 25 May 2012)
New Revision: 11000

Added:
   trunk/packages/dcmtk/trunk/debian/patches/bug674361.patch
Modified:
   trunk/packages/dcmtk/trunk/debian/changelog
   trunk/packages/dcmtk/trunk/debian/control
   trunk/packages/dcmtk/trunk/debian/patches/series
   trunk/packages/dcmtk/trunk/debian/rules
Log:
Work on dcmtk package/gcc 4.7 issue

Modified: trunk/packages/dcmtk/trunk/debian/changelog
===================================================================
--- trunk/packages/dcmtk/trunk/debian/changelog	2012-05-25 08:46:12 UTC (rev 10999)
+++ trunk/packages/dcmtk/trunk/debian/changelog	2012-05-25 09:51:25 UTC (rev 11000)
@@ -1,3 +1,11 @@
+dcmtk (3.6.0-11) UNRELEASED; urgency=low
+
+  * Fix compilation with gcc 4.7. Closes: #674361
+   - debian/patches/bug674361.patch
+  * Make sure to link against libxml2
+
+ -- Mathieu Malaterre <malat <at> debian.org>  Fri, 25 May 2012 11:19:22 +0200
+
 dcmtk (3.6.0-10) unstable; urgency=low

   [ Andreas Tille ]
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