Martín Ferrari | 24 Jun 19:26 2016
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Bug#828073: ITP: prometheus-alertmanager -- Handle and deliver alerts created by Prometheus

Package: wnpp
Severity: wishlist
Owner: "Martín Ferrari" <tincho <at> debian.org>

* Package name    : prometheus-alertmanager
  Version         : 0.2.1
  Upstream Author : The Prometheus Authors
* URL             : https://prometheus.io/
* License         : Apache-2
  Programming Lang: Go
  Description     : Handle and deliver alerts created by Prometheus

 The Alertmanager handles alerts sent by client applications such as the
 Prometheus server. It takes care of deduplicating, grouping, and routing them
 to the correct receiver integration such as email, PagerDuty, or OpsGenie. It
 also takes care of silencing and inhibition of alerts.

Mouaad Aallam | 24 Jun 16:17 2016

Bug#828059: ITP: google-android-m2repository-installer -- This is a packaged script that automatically downloads Google's Android support m2 repository package and unpacks it into Debian-friendly paths

Package: wnpp
Severity: wishlist
Owner: Mouaad Aallam <Mouaad <at> Aallam.com>

* Package name    : google-android-m2repository-installer
  Version         : 33.0.0
  Upstream Author : Google, Inc.
* URL             : https://developer.android.com/topic/libraries/support-library/index.html
* License         : Apache 2.0
  Programming Lang: C, Java, Bash
  Description     : Google Android Support m2 repository

This package will download the Google Android Support Libary repository and create a Debian package. This
is structured as a maven m2 repository of all the versions of the library.
The Android Support Library offers a number of features that are not built into the framework. These
libraries offer backward-compatible versions of new features, provide useful UI elements that are not
included in the framework, and provide a range of utilities that apps can draw on.

WARNING: Installing this Debian package causes android_m2repository_r33.zip to be downloaded from
dl-ssl.google.com. The End User License Agreement of this binary package is available at developer.android.com.

Sascha Steinbiss | 24 Jun 11:43 2016
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Bug#828042: ITP: libssw -- fast SIMD parallelized implementation of the Smith-Waterman algorithm

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <satta <at> debian.org>

* Package name    : libssw
  Version         : git20160511.7d84de2
  Upstream Author : Mengyao Zhao <zhaomengyao <at> gmail.com>
* URL             : https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
* License         : MIT
  Programming Lang: C
  Description     : fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level. The SSW library provides an API that can be
flexibly used by programs written in C, C++ and other languages. The library
can do protein and genome alignment directly.
The current version of this implementation is ~50 times faster than an ordinary
Smith-Waterman. It can return the Smith-Waterman score, alignment location
and traceback path (cigar) of the optimal alignment accurately; and return
the sub-optimal alignment score and location heuristically.

This package will be maintained by the Debian Med Packaging Team as a
dependency for SPAdes, to replace code currently embedded there.

wnpp | 24 Jun 02:27 2016
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Work-needing packages report for Jun 24, 2016

The following is a listing of packages for which help has been requested
through the WNPP (Work-Needing and Prospective Packages) system in the
last week.

Total number of orphaned packages: 741 (new: 3)
Total number of packages offered up for adoption: 174 (new: 1)
Total number of packages requested help for: 48 (new: 0)

Please refer to http://www.debian.org/devel/wnpp/ for more information.

------------------------------------------------------------------------

The following packages have been orphaned:

   agg (#827993), orphaned today
     Description: AntiGrain Geometry graphical toolkit
     Installations reported by Popcon: 193

   blockfinder (#827652), orphaned 4 days ago
     Description: enumerates network information for countries
     Installations reported by Popcon: 18

   cplay (#827890), orphaned yesterday
     Installations reported by Popcon: 161

738 older packages have been omitted from this listing, see
http://www.debian.org/devel/wnpp/orphaned for a complete list.

------------------------------------------------------------------------

(Continue reading)

Elimar Riesebieter | 23 Jun 21:10 2016
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Neomutt packages available

Hi all,

I am pleased to announce the availability of neomutt [0] packages for
Debian. Hints for installation you'll find at [1].

I've packaged neomutt for Debian. A Debian ITP [2] is filed. The
binaries are build in a sid environment. The sources are fetched
from [3]. The neomutt branch is used. I'll update packages as
needed. Please test the packages and let me know of any further
glitches you find. If you want, you can open an issue on [3]. The
Debian Bug Tracking System is not involved as the package isn't
uploaded yet, but will be soon.

Thanks in advance for your cooperation

Elimar

[0] http://www.neomutt.org/
[1] http://www.lxtec.de/debarchiv
[2] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=825821
[3] https://github.com/neomutt/neomutt

--

-- 
  The path to source is always uphill!
                                -unknown-


Andreas Tille | 23 Jun 16:26 2016
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Bug#827992: ITP: phipack -- PHI test and other tests of recombination

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille <at> debian.org>

* Package name    : phipack
  Version         : 0.0.20160614
  Upstream Author : David Bryant <david.bryant <at> otago.ac.nz>
* URL             : http://www.maths.otago.ac.nz/~dbryant/software/PhiPack.tar.gz
* License         : LGPL
  Programming Lang: C
  Description     : PHI test and other tests of recombination
 The PhiPack software package implements a few tests for recombination
 and can produce refined incompatibility matrices as well. Specifically,
 PHIPack implements the 'Pairwise Homoplasy Index', Maximum Chi2 and the
 'Neighbour Similarity Score'. The program Phi can be run to produce a
 p-value of recombination within a data set and the program profile can
 be run to determine regions exhibiting strongest evidence mosaicism.

Remark: This package is a precondition for a Debian Med package (parsnp)
and will be maintained by the Debian Med team at
   https://anonscm.debian.org/git/debian-med/phipack.git

Kartik Mistry | 23 Jun 15:52 2016
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Bug#827988: ITP: apertium-eu-en -- Apertium translation data for the Basque-English pair

Package: wnpp
Severity: wishlist
Owner: Kartik Mistry <kartik <at> debian.org>

* Package name    : apertium-eu-en
  Version         : 0.3.1
  Upstream Author : 2008, Prompsit Language Engineering
                    2005-2008, Universitat d'Alacant (Transducens group)
                    2005-2007, IXA research group / IXA ikerkuntza taldea
                    2005-2007, TALP research group, Universitat Politècnica de Catalunya
* URL             : http://www.apertium.org/
* License         : GPL-2
  Programming Lang: 
  Description     : Apertium translation data for the Basque-English pair

Data package providing Apertium language resources for translating
between the Basque and English languages.

 - why is this package useful/relevant? is it a dependency for
   another package? do you use it? if there are other packages
   providing similar functionality, how does it compare?

 A: Apertium Machine Translation data package for Basque-English language pair.

 - how do you plan to maintain it? inside a packaging team
   (check list at https://wiki.debian.org/Teams)? are you
   looking for co-maintainers? do you need a sponsor?

 A: debian-science team + upstream support.

(Continue reading)

Andreas Tille | 23 Jun 14:13 2016
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Bug#827978: ITP: libfastahack -- library for indexing and sequence extraction from FASTA files

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille <at> debian.org>

* Package name    : libfastahack
  Version         : 0.0+20160309
  Upstream Author : Erik Garrison <erik.garrison <at> gmail.com>
* URL             : https://github.com/ekg/fastahack
* License         : GPL
  Programming Lang: C++
  Description     : library for indexing and sequence extraction from FASTA files
 fastahack is a small application for indexing and extracting sequences and
 subsequences from FASTA files.  The included Fasta.cpp library provides a FASTA
 reader and indexer that can be embedded into applications which would benefit
 from directly reading subsequences from FASTA files.  The library automatically
 handles index file generation and use.
 .
 Features:
  * FASTA index (.fai) generation for FASTA files
  * Sequence extraction
  * Subsequence extraction
  * Sequence statistics (currently only entropy is provided)
 .
 Sequence and subsequence extraction use fseek64 to provide fastest-possible
 extraction without RAM-intensive file loading operations.  This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.

Remark: This package is a (pre-)pre-condition for some Debian Med target
software (freebayes).  It will be maintained at
(Continue reading)

Larry Sevilla | 23 Jun 07:45 2016
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Debian Testing Cannot be installed on Hyper-V 2012 R2

Package: debian-installer
Version: debian-testing-i386-netinst.iso  dated 2016-06-20 07:33 391Mb

I'm trying to install Debian Testing under Hyper-V Windows Server 2012 R2.

mem: Start-up 1024Mb Dynamic Min 512Mb Max 3584
proc: 2
vhdx: 10Gb

Install it using non-GUI.

Then It freezes during:
   Partitions formatting at 33%
   Creating ext4 file system for / in partition #1 of SCSI3 (0,0,0) (sda)...

Note: I have installed Debian 7/Wheezy 7.11 and 8/Jessie 8.5 on Hyper-V;
          so far no problem on installation with the two versions...

Sascha Steinbiss | 23 Jun 00:05 2016

Bug#827937: ITP: libhat-trie -- HAT-trie, an extremely efficient (space and time) modern variant of tries

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <satta <at> debian.org>

* Package name    : libhat-trie
  Version         : 0.0~git25f9e946
  Upstream Author : Daniel C. Jones <dcjones <at> cs.washington.edu>
* URL             : https://github.com/dcjones/hat-trie
* License         : MIT
  Programming Lang: C
  Description     : HAT-trie, an extremely efficient (space and time) modern variant of tries

This is an ANSI C99 implementation of the HAT-trie data structure of Askitis
and Sinha, an extremely efficient (space and time) modern variant of tries.
The version implemented here maps arrays of bytes to words (i.e., unsigned
longs), which can be used to store counts, pointers, etc, or not used at all
if you simply want to maintain a set of unique strings.

This library is packaged by the Debian Med Packaging Team as a dependency of
SPAdes, to replace code currently embedded there.

Ondřej Nový | 22 Jun 23:10 2016
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Bug#827934: ITP: python-fakeredis -- Fake version of a redis-py

Package: wnpp
Severity: wishlist
Owner: "Ondřej Nový" <onovy <at> debian.org>

* Package name    : python-fakeredis
  Version         : 0.7.0
  Upstream Author : James Saryerwinnie
* URL             : https://github.com/jamesls/fakeredis
* License         : BSD-3-clause
  Programming Lang: Python
  Description     : Fake version of a redis-py

fakeredis is a pure Python implementation of the redis-py Python client that
simulates talking to a redis server. This was created for a single purpose:
to write unittests. Setting up redis is not hard, but many times you want to
write unittests that do not talk to an external server (such as redis).
This module now allows tests to simply use this module as a reasonable
substitute for redis.

We are using this package in our company and we are going to maintain it in DPMT.


Gmane