Lukas Curakovic | 11 Apr 08:40 2016
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Re: Building Geant4.10.02.p01 for Gate 7.2

Yes, I did solve my problem and it was somewhat my own fault. Apparently
cmake used an older version of the gcc than I thought. Even though the
selected one should have been a link to the correct version.
I edited the options for gcc and g++ and then everything worked fine.

Regards,
Lukas

Am 08.04.2016 um 20:48 schrieb David Boersma:
> Hi Lukas,
> 
> Did you solve your problem?
> 
> If yes, it would be nice if you could inform the Gate-user mailing list
> what the solution was.
> 
> If no, what did you try to solve it? I checked the Geant4 installation &
> configuration mailing list, but I did not see you in the archive.
> http://hypernews.slac.stanford.edu/HyperNews/geant4/get/installconfig.html
> 
> Regards,
> David
> 
> Den 05/04/2016 kl. 13:58, skrev Lukas Curakovic:
>> Hello,
>>
>> I am currently encountering a problem while parallel building Geant4:
>>
>> make -j4
>> [  0%] Built target G4ABLA
(Continue reading)

Lukas Curakovic | 5 Apr 13:58 2016
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Picon

Building Geant4.10.02.p01 for Gate 7.2

Hello,

I am currently encountering a problem while parallel building Geant4:

make -j4
[  0%] Built target G4ABLA
[  0%] Built target G4EMLOW
[  0%] Built target G4ENSDFSTATE
[  0%] Built target G4NDL
[  1%] Built target G4NEUTRONXS
[  1%] Built target G4PII
[  2%] Built target G4SAIDDATA
[  2%] Built target PhotonEvaporation
[  2%] Built target RadioactiveDecay
[  2%] Built target RealSurface
[  3%] Built target G4zlib
[  4%] Built target G4gl2ps
[  5%] Built target G4global
[  6%] Built target G4intercoms
[  6%] Built target G4materials
[  7%] Built target G4graphics_reps
[  8%] Built target G4interfaces
[ 10%] Built target G4analysis
[ 17%] Built target G4geometry
[ 23%] Built target G4particles
[ 24%] Built target G4track
[ 27%] Built target G4digits_hits
[ 27%] Building CXX object
source/processes/CMakeFiles/G4processes.dir/electromagnetic/dna/processes/src/G4DNABrownianTransportation.cc.o
[ 27%] Building CXX object
(Continue reading)

damian.stachura | 1 Apr 11:16 2016
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Picon

Energy spectrum

 Hi,

     I try to get an energy spectrum of produced photons in a box 
 phantom on different depths. I searched any useful commands but I found 
 none. Could you help me ?

 Best Regards;
 Damian Stachura

Bissell, Sophie | 29 Mar 15:26 2016
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Re: Multi-detector systems

Hi Charlie,

Thanks very much for your advice. I will give your suggestion a try and see if it breaks up the results in the way that I require.

Thanks again!
Sophie
From: Charles A. Maitz [camaitz-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org]
Sent: 29 March 2016 14:04
To: 'Bissell, Sophie'; gate-users-ZwoEplunGu2uWGBtOU8ma0fXCdDtWGEhSoIsB4E12gc@public.gmane.org
Subject: RE: [Gate-users] Multi-detector systems

Hi Sophie,

 

It might not be exactly what you’re looking for, but you could use one of the Actors, which are typically used for dosimetry purposes.  I believe you could use a doseActor, attach one to each detector head, and collect NbOfHits information.  That should work, but keep in mind that I have had my own challenges in trying to get these actors to work appropriately.

 

Good luck!

-charlie

 

 

Charles A. Maitz, DVM, PhD, DACVR-RO

Assistant Professor of Radiation Oncology

Department of Veterinary Medicine & Surgery

International Institute of Nano & Molecular Medicine

University of Missouri – Columbia

maitzc-807GuYrz9FD2fBVCVOL8/A@public.gmane.org

 

 

 

From: gate-users-bounces-ZwoEplunGu2zQB+pC5nmwQ@public.gmane.orgngatecollaboration.org [mailto:gate-users-bounces-ZwoEplunGu2uWGBtOU8ma0fXCdDtWGEh9Sl0XMgJPXI@public.gmane.orgon.org] On Behalf Of Bissell, Sophie
Sent: Tuesday, March 29, 2016 7:34 AM
To: gate-users-ZwoEplunGu2uWGBtOU8ma0fXCdDtWGEhSoIsB4E12gc@public.gmane.org
Subject: [Gate-users] Multi-detector systems

 

Hi Gaters,

I'm working with s detector system made up of 3 SPECThead detectors. I have successfully defined the detector geometry and am collecting hits in all three detectors.

However I wondered if there was a way of defining a root output for each camera? The ASCII files define which camera each event occurred in along with the relevant pixel.  The root output only tells me how many events occurred in each head and the pixel file simply gives the hits in each pixel (1-256) in all detector heads combined. Has anyone tried to do this before and can recommend how I might be able to get a root output defining the number of hits in each pixel for each head separately?

Thanks
Sophie

<div>
<div>Hi Charlie,<br><br>
Thanks very much for your advice. I will give your suggestion a try and see if it breaks up the results in the way that I require.<br><br>
Thanks again!<br>
Sophie<br><div>
<div>From: Charles A. Maitz [camaitz@...]<br>Sent: 29 March 2016 14:04<br>To: 'Bissell, Sophie'; gate-users@...<br>Subject: RE: [Gate-users] Multi-detector systems<br><br>
</div>
<div></div>
<div>
<div class="WordSection1">
<p class="MsoNormal"><span>Hi Sophie,</span></p>
<p class="MsoNormal"><span>&nbsp;</span></p>
<p class="MsoNormal"><span>It might not be exactly what you&rsquo;re looking for, but you could use one of the Actors, which are typically used for dosimetry purposes.&nbsp; I believe you could
 use a doseActor, attach one to each detector head, and collect NbOfHits information.&nbsp; That should work, but keep in mind that I have had my own challenges in trying to get these actors to work appropriately.</span></p>
<p class="MsoNormal"><span>&nbsp;</span></p>
<p class="MsoNormal"><span>Good luck!</span></p>
<p class="MsoNormal"><span>-charlie</span></p>
<p class="MsoNormal"><span>&nbsp;</span></p>
<p class="MsoNormal"><span>&nbsp;</span></p>
<p class="MsoNormal"><span>Charles A. Maitz, DVM, PhD, DACVR-RO</span></p>
<p class="MsoNormal"><span>Assistant Professor of Radiation Oncology</span></p>
<p class="MsoNormal"><span>Department of Veterinary Medicine &amp; Surgery</span></p>
<p class="MsoNormal"><span>International Institute of Nano &amp; Molecular Medicine</span></p>
<p class="MsoNormal"><span>University of Missouri &ndash; Columbia</span></p>
<p class="MsoNormal"><span><a href="redir.aspx?REF=dsSVevnC92-ibX6_pd7ENVNACdXhqZs0SDxAIRPPn-kM3AaV1VfTCAFtYWlsdG86bWFpdHpjQG1pc3NvdXJpLmVkdQ.." target="_blank">maitzc@...</a></span></p>
<p class="MsoNormal"><span>&nbsp;</span></p>
<p class="MsoNormal"><span>&nbsp;</span></p>
<p class="MsoNormal"><span>&nbsp;</span></p>
<div>
<div>
<p class="MsoNormal"><span>From:</span><span> gate-users-bounces@...ngatecollaboration.org [mailto:gate-users-bounces@...on.org]
On Behalf Of Bissell, Sophie<br>Sent: Tuesday, March 29, 2016 7:34 AM<br>To: gate-users@...<br>Subject: [Gate-users] Multi-detector systems</span></p>
</div>
</div>
<p class="MsoNormal">&nbsp;</p>
<div>
<p class="MsoNormal"><span>Hi Gaters,<br><br>
I'm working with s detector system made up of 3 SPECThead detectors. I have successfully defined the detector geometry and am collecting hits in all three detectors.<br><br>
However I wondered if there was a way of defining a root output for each camera? The ASCII files define which camera each event occurred in along with the relevant pixel.&nbsp; The root output only tells me how many events occurred in each head and the pixel file
 simply gives the hits in each pixel (1-256) in all detector heads combined. Has anyone tried to do this before and can recommend how I might be able to get a root output defining the number of hits in each pixel for each head separately?<br><br>
Thanks<br>
Sophie</span></p>
</div>
</div>
</div>
</div>
</div>
</div>
Bissell, Sophie | 29 Mar 14:34 2016
Picon

Multi-detector systems

Hi Gaters,

I'm working with s detector system made up of 3 SPECThead detectors. I have successfully defined the detector geometry and am collecting hits in all three detectors.

However I wondered if there was a way of defining a root output for each camera? The ASCII files define which camera each event occurred in along with the relevant pixel.  The root output only tells me how many events occurred in each head and the pixel file simply gives the hits in each pixel (1-256) in all detector heads combined. Has anyone tried to do this before and can recommend how I might be able to get a root output defining the number of hits in each pixel for each head separately?

Thanks
Sophie
<div>
<div>Hi Gaters,<br><br>
I'm working with s detector system made up of 3 SPECThead detectors. I have successfully defined the detector geometry and am collecting hits in all three detectors.<br><br>
However I wondered if there was a way of defining a root output for each camera? The ASCII files define which camera each event occurred in along with the relevant pixel.&nbsp; The root output only tells me how many events occurred in each head and the pixel file
 simply gives the hits in each pixel (1-256) in all detector heads combined. Has anyone tried to do this before and can recommend how I might be able to get a root output defining the number of hits in each pixel for each head separately?<br><br>
Thanks<br>
Sophie<br>
</div>
</div>
Sepideh White | 25 Mar 20:31 2016
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(no subject)

Hi I try to get "Hits" information in the phantom volume in one cylindricalPET system. how can i att ach phantom to system and then to crystalSD?is it possible in GATE?
<div><div>Hi
     I try to get "Hits" information in the phantom volume in one cylindricalPET system. how can i att ach phantom to system and then to crystalSD?is it possible in GATE?</div></div>
Peyman Sheikhzadeh | 24 Mar 09:40 2016
Picon

volume definiation

  Dear all,

 I want to simulate multiring scanner  with different number of same modules in every ring.how can I simulate this model in GATE? actullay I need to model  some sister modules or blocks or rings from one mother volume.

I will be grateful,if any answer me how I do? 

Best Regards
-------------------


Peyman Sh


Email: psh82-/E1597aS9LQAvxtiuMwx3w@public.gmane.org


<div><div>
<div><span></span></div>
<div></div>
<div>&nbsp; Dear all,</div>
<div class=""><br class=""></div>
<div dir="ltr" class="">&nbsp;I want to simulate multiring scanner &nbsp;with different number of same modules in every ring.how can I simulate this model in GATE? actullay I need to model &nbsp;some sister modules or blocks or rings from one mother volume.</div>
<div dir="ltr" class=""><br class=""></div>
<div dir="ltr" class="">I will be grateful,if any answer me how I do?&nbsp;</div>
<div class="">
<div class=""><div class="" dir="RTL"><span class=""><br class=""></span></div></div>
<span class="">Best Regards</span><br class=""><div class=""><span class="">-------------------</span></div>
<div class=""><br class=""></div>
<div class="">
<br class=""><div class="">
<div class=""><span class="">Peyman Sh</span></div>
<div class=""><span class=""><br class=""></span></div>
<div class=""><br class=""></div>
<div class="">
<span class="">Email:&nbsp;</span><span class="">psh82@...</span>
</div>
<div dir="ltr" class=""><span class=""><br class=""></span></div>
</div>
</div>
</div>
<div class="signature"><br></div>
</div></div>
David Sarrut | 18 Mar 15:35 2016
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Picon

Exercises with Gate

Hello, 

I made some exercises to help learning Gate, mostly for radiation therapy:

Feedback welcome, 
David

--
David Sarrut, Phd
Directeur de recherche CNRS
CREATIS, UMR CNRS 5220, Inserm U1206
Centre de lutte contre le cancer Léon Bérard
28 rue Laënnec, 69373 Lyon cedex 08
Tel : 04 78 78 51 51 / 06 74 72 05 42
http://www.creatis.insa-lyon.fr/~dsarrut
_________________________________
 "2 + 2 = 5,  for extremely large values of 2"
_________________________________
<div><div dir="ltr">Hello,&nbsp;<div><br></div>
<div>I made some exercises to help learning Gate, mostly for radiation therapy:</div>
<div><a href="https://dsarrut.gitbooks.io/gate-exercises/content/" target="_blank">https://dsarrut.gitbooks.io/gate-exercises/content/</a></div>
<div><br></div>
<div>Feedback welcome,&nbsp;</div>
<div>David<br clear="all"><div><br></div>-- <br><div><div dir="ltr"><div><div dir="ltr">David Sarrut, Phd<br>Directeur de recherche CNRS<br>CREATIS, UMR CNRS 5220, Inserm&nbsp;U1206<div>Centre de lutte contre le cancer L&eacute;on B&eacute;rard<br>28 rue La&euml;nnec, 69373 Lyon cedex 08<br>Tel : <a href="tel:04%2078%2078%2051%2051" value="+33478785151" target="_blank">04 78 78 51 51</a> / <a href="tel:06%2074%2072%2005%2042" value="+33674720542" target="_blank">06 74 72 05 42</a><br><a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a><br>_________________________________</div>
<div>&nbsp;"2 + 2 = 5,&nbsp; for extremely large values of 2"<br>_________________________________</div>
</div></div></div></div>
</div>
</div></div>
Lorena Vázquez Canelas | 17 Mar 12:31 2016
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SPECT-SIMULATION

Hi Gaters,

I'm doing a SPECT simulation and i have my output with formats .hdr and .sin.
Has anyone been able to reconstruct the image from the GATE output using STIR?
With projections?

Thanks in advance,

<div><div dir="ltr">Hi Gaters,<br><br>I'm doing a SPECT simulation and i have my output with formats .hdr and .sin. <br>Has anyone been able to reconstruct the image from the GATE output using STIR? <br>With projections?<br><br>Thanks in advance,<br><br>
</div></div>
Maryam Fallahpoor | 11 Mar 18:43 2016
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error in CLHEP installation

Hi,
I'm trying to install Gate7.2, but in CLHEP 2.3.1.1 installation after typing "cmake
-DCMAKE_INSTALL_PREFIX=/PATH_TO/2.3.1.1-install /PATH_TO/2.3.1.1/CLHEP/" with appropriate
path, this error occurs:

-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- libraries will be installed in /.../2.3.1.1-install/lib
-- cmake build type is RelWithDebInfo
CMake Error at cmake/Modules/ClhepVariables.cmake:123 (message):
  c++11 extension is not available for /usr/bin/c++
Call Stack (most recent call first):
  cmake/Modules/ClhepVariables.cmake:204 (_clhep_verify_cxx11)
  cmake/Modules/ClhepVariables.cmake:255 (_clhep_check_cxxstd)
  CMakeLists.txt:85 (clhep_set_compiler_flags)

-- Configuring incomplete, errors occurred!

 i try to install this version, both in ubuntu and fedora but the error is the same.
is there anyone to help me solve this problem?
thanks in advance.

  

  

  

  

 Maryam Fallahpoor
 E-mail: maryam.fallahpoor <at> yahoo.com
 Tel: +989124604898
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Alexandre | 10 Mar 14:45 2016
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Re: Gate-users Digest, Vol 118, Issue 17


Hi Lorena,

What do you want to measure experimentally ? Absorbed dose ?
In this case, first you could choose a physical phantom allowing your experimental measurements, then
CT-scan it, and finally use the CT-scan data as voxelized phantom in GATE for your simulations.
I hope this will help.

Regards,
Alexandre Clavel
PhD candidate in Medical Physics
CREATIS (INSA Lyon) & Institut de Radiophysique (Lausanne)
EOS imaging

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Objet : Gate-users Digest, Vol 118, Issue 17

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Today's Topics:

   1. VOXELIZED-PHANTOM (Lorena V?zquez Canelas)

----------------------------------------------------------------------

Message: 1
Date: Wed, 9 Mar 2016 10:22:58 +0000
From: Lorena V?zquez Canelas <lowry_v_c@...>
To: "gate-users@..."
        <gate-users@...>
Subject: [Gate-users] VOXELIZED-PHANTOM
Message-ID: <DUB113-W551DBD70F8F6E1B8CD81D3A5B30@...>
Content-Type: text/plain; charset="iso-8859-1"

Hi Gaters,
I'm doing a simulation about voxelized organ and my idea would be to compare the simulated organ with
experimental measurements.
Do you know if you could do?
The problem is that if I use a Hoffmann phantom would be very dfficult to compare then with any experimental measure.
What do you think you about this?
Thanks in advance,

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