21 Jan 2010 22:39
building graph-tool under Mac OS X
tcb <thecolourblue+m <at> gmail.com>
2010-01-21 21:39:44 GMT
2010-01-21 21:39:44 GMT
Hi,
I dont know if graph-tool is fully supported under macosx, but I have encountered a few problems with building it (on osx 10.6). The problems seem to stem from the configure/libtool scripts- about which I know very little- but I have figured out enough to get it to build. I noticed the same problem was reported on this list back in October (was it ever resolved?) - the errors were along the lines of "configure: error: No usable boost::python found". This problem would seem to be solved by modifying the configure script, which tries to link against the boost libraries with libboost-python*.[so,a] extensions- on osx I have compiled boost as a shared library and so it should look for libboost-python*.[dylib]. There is a patch for the configure script below. I also found some problems with the libtool script, so I replaced it with libtool (from the macports libtool package) (cp /opt/local/bin/glibtool ~/src/graph-tool/libtool) and the build proceeded to completion. This patch just gets the build working- I dont really know where the configure script gets the [so,a] information from, and its old version of libtool- the proper fix would address these issues.
There was also a problem I encountered with numpy_bind.hh when compiling with gcc44 (from macports). The fix was to add another element to the numpy_types map- the patch is also below.
regards,
tcb
--- configure~ 2010-01-21 05:30:22.000000000 +0000
+++ configure 2010-01-21 05:41:37.000000000 +0000
<at> <at> -16695,7 +16695,7 <at> <at>
BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
if test "x$ax_boost_user_iostreams_lib" = "x"; then
- for libextension in `ls $BOOSTLIBDIR/libboost_iostreams*.{so,a}* 2>/dev/null | sort -r | sed 's,.*/,,' | sed -e 's;^lib\(boost_iostreams.*\)\.so.*$;\1;' -e 's;^lib\(boost_iostreams.*\)\.a*$;\1;'` ; do
+ for libextension in `ls $BOOSTLIBDIR/libboost_iostreams*.{dylib,a}* 2>/dev/null | sort -r | sed 's,.*/,,' | sed -e 's;^lib\(boost_iostreams.*\)\.dylib.*$;\1;' -e 's;^lib\(boost_iostreams.*\)\.a*$;\1;'` ; do
ax_lib=${libextension}
as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for exit in -l$ax_lib" >&5
<at> <at> -16926,7 +16926,7 <at> <at>
BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
if test "x$ax_boost_user_regex_lib" = "x"; then
- for libextension in `ls $BOOSTLIBDIR/libboost_regex*.{so,a}* 2>/dev/null | sort -r | sed 's,.*/,,' | sed -e 's;^lib\(boost_regex.*\)\.so.*$;\1;' -e 's;^lib\(boost_regex.*\)\.a*$;\1;'` ; do
+ for libextension in `ls $BOOSTLIBDIR/libboost_regex*.{dylib,a}* 2>/dev/null | sort -r | sed 's,.*/,,' | sed -e 's;^lib\(boost_regex.*\)\.dylib.*$;\1;' -e 's;^lib\(boost_regex.*\)\.a*$;\1;'` ; do
ax_lib=${libextension}
as_ac_Lib=`$as_echo "ac_cv_lib_$ax_lib''_exit" | $as_tr_sh`
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for exit in -l$ax_lib" >&5
--- a/src/graph/numpy_bind.hh
+++ b/src/graph/numpy_bind.hh
<at> <at> -50,13 +50,16 <at> <at> typedef mpl::map<
mpl::pair<int64_t, mpl::int_<NPY_INT64> >,
mpl::pair<uint64_t, mpl::int_<NPY_UINT64> >,
mpl::pair<double, mpl::int_<NPY_DOUBLE> >,
- mpl::pair<long double, mpl::int_<NPY_LONGDOUBLE> >
+ mpl::pair<long double, mpl::int_<NPY_LONGDOUBLE> >,
+ mpl::pair<unsigned long int, mpl::int_<NPY_ULONG> >
> numpy_types;
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