Steven Kennedy | 8 Feb 22:07
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Fwd: Hospital patient flow questions

I always forget to reply-all.

---------- Forwarded message ----------
From: Steven Kennedy <stevenkennedy2263 <at> gmail.com>
Date: Thu, Feb 9, 2012 at 8:00 AM
Subject: Re: [Simpy-users] Hospital patient flow questions
To: "cong k. (kc1g08)" <kc1g08 <at> soton.ac.uk>

Hi Cong,

For question 1:
Your classes that inherit from SimPy.Simulation.Process need to have
at least one function with a "yield" statement. Check your code - I
suspect this is where the error is coming from.

For question 2:
There are probably plenty of ways to do it, but I would model it this way:
1. Your patients are objects with attributes that define what will
happen to them when they go through the hospital processes
2. You will have several Stores that hold the Patient objects (eg.
waiting room, x-ray waiting line, etc)
3. Your generators simply create Patient objects at different rates,
with different attributes (e.g a patient arriving by ambulance may
have a higher likelihood of needing an x-ray). Once the Patient object
is created, they will be put into the WaitingRoom store.
4. Your Triage process has a single PEM which defines what happens to
the patient (ie. what Store they will be placed into next). This
should be based on attributes of the Patient object (eg. if
patient.broken_arm==True: yield put,self,XRayWaitLine,[patient]).
5. You then have other hospital processes (eg. X-Ray) that take
(Continue reading)

John | 1 Feb 09:56
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FW: Simpy 2.3.1


-----Original Message-----
From: John [mailto:collis-john <at> sky.com] 
Sent: 01 February 2012 08:57
To: 'Stefan Scherfke'
Subject: RE: [Simpy-users] Simpy 2.3.1

All of my problems have been identified and solved. Although I had installed
the latest Python and Simpy, I had an earlier version of Python (2.5) on the
computer, which was the one being used! Replacing this with the latest
version and reinstalling Simpy enabled me to get back to a working, stable
system.
Many thanks for your replies
John

-----Original Message-----
From: Stefan Scherfke [mailto:stefan <at> sofa-rockers.org] 
Sent: 01 February 2012 06:55
To: John
Cc: simpy-users <at> lists.sourceforge.net
Subject: Re: [Simpy-users] Simpy 2.3.1

Which version of Python do you have? SimPy 2.3 requires at least Python 2.6.

cheers,
Stefan

Am 2012-01-31 um 14:05 schrieb John:

> I've installed Simpy 2.3.1 and tried to 'compile' bakery.py, this is
(Continue reading)

John | 31 Jan 14:05
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Simpy 2.3.1

Ive installed Simpy 2.3.1 and tried tocompile bakery.py, this is reporting an error  in Simulation.py, line 564

except FatalSimError as error:

Regards,

John

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John | 31 Jan 15:44
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What is missing

Hello,

I have tried to debug a simpy scenario on a Windows Vista machine and I am getting an the error message:

from SimPy.Simulation import *

ImportError: No module named SimPy.Simulation

I presume that I am missing an environment name, but I am not sure what name should be set and to what.

Many thanks,

John

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cong k. (kc1g08 | 30 Jan 16:25
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Hospital patient flow questions

Dear SimPy users,

We're currently making a model for simulating patient flow in a emergency department of a hospital. There
are multiple modes of arrival (by public transport, by ambulance, etc), a large amount of servers
(triage, nurse assessment, doctor assessment), resources and resource pools. 

1. Is there a way to reuse the same server at different parts of the simulation without wiring the code again?
For instance we want to put all the servers inside one file called servers.py, then call server.triage or
server.nurse in the main.py file.

2. Is it possible to simulate multiple modes of arrival at the same time but they all share the same or similar
PEM (servers)? i.e. is something like this valid?
    endTime = 50
    Sim.initialize()

    pgSelf = ArrSelf.PatientGen()
    pgAmbulance = ArrAmbu.PatientGen()
    pgAmbulatory = ArrAmbulatory.PatientGen()
    pgGP = ArrGPReferred.PatientGen()

    Sim.activate(pgSelf, pgSelf.generate())
    Sim.activate(pgAmbulance, pgAmbulance.generate())
    Sim.activate(pgAmbulatory, pgAmbulatory.generate())
    Sim.activate(pgGP, pgGP.generate())

    Sim.simulate(until=endTime)

3. Is there a such thing as resource pool (a resource that contains different types of resources) in SimPy?
Where a server can use any of the resource from the resource pool.

4. Are there any example that's related to my application, if so where can we find them?

Regards,

Kelong
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Roberto Pagliari | 27 Jan 23:18
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simpy installation error (python 3.2)

Hi,
I'm getting this error while installing SimPy 2.3. 

>>python setup.py install
running install
running build
running build_py
running install_lib
byte-compiling C:\PROGRA~2\Python32\Lib\site-packages\SimPy\tkconsole.py to tkconsole.pyc
  File "C:\PROGRA~2\Python32\Lib\site-packages\SimPy\tkconsole.py", line 137
    raise KeyError, 'no such configuration option \'%s\'' % key
                  ^
SyntaxError: invalid syntax

running install_egg_info
Removing C:\PROGRA~2\Python32\Lib\site-packages\SimPy-2.3-py3.2.egg-info
Writing C:\PROGRA~2\Python32\Lib\site-packages\SimPy-2.3-py3.2.egg-info

do you know what the proglem might be?
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Forrest Iandola | 25 Jan 06:58
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Re: SimPy for simple ABM

>>Perhaps I'm wrong, but I was thinking matplotlib is primarily for
>>plotting results instead of for watching events happen in a simulation.
>You can draw all kind of stuff and if your plots aren’t too complex,
>you can even use it for real-time visualization.
Fantastic--Thanks! I'll give this a try and let you know if I have any problems.

I'm CC'ing simpy-users, so your reply is archived in case anyone has the same question in the future. :)

Forrest

On Tue, Jan 24, 2012 at 11:48 PM, Stefan Scherfke <stefan <at> sofa-rockers.org> wrote:
Hi Forrest,

Am 2012-01-23 um 22:55 schrieb Forrest Iandola:

> Hi Stefan,
>
> Thanks for your fast reply!
>
> I'm using SimPy to simulate deterministic communication networks. I'd like to be able see a visualization of network packets propagating through the system.

I’m not sure if the SimGUI is able to do this. I’ve admittedly never used the SimPy GUI. If I needed a GUI, I made one using PyQT or PySide and matplotlib. This is a bit more work, but far more flexible (and good looking).

Also, the SimPy GUI does not support Python 3 and will be removed in SimPy 3.0.

>
> Perhaps I'm wrong, but I was thinking matplotlib is primarily for plotting results instead of for watching events happen in a simulation.


You can draw all kind of stuff and if your plots aren’t too complex, you can even use it for real-time visualization.


Stefan

>
> Thanks,
> Forrest
>
> On Mon, Jan 23, 2012 at 2:54 PM, Stefan Scherfke <stefan <at> sofa-rockers.org> wrote:
> What kind of visualization? I’d suggest to collect data during the simulation run and then to draw plots using matplotlib.
> cheers,
> stefan
>
>
> Am 2012-01-23 um 21:52 schrieb Forrest Iandola:
>
> > >Also, what if I want to visualize processes?
> > I'm also curious about this.
> >
> > Can SimGUI (http://simpy.sourceforge.net/SimPyDocs/Manuals/GUIManual/SimGUImanual.html) enable the visualization of processes in SimPy?
> >
> > Thanks,
> > Forrest
> >
> > On Sat, Jan 21, 2012 at 10:19 AM, Aya al Zarka <aalzarka <at> gmail.com> wrote:
> > Thank you Mr. Stefan for your help. I found examples to answer my question and I am trying to learn from. Along the way, I will ask some questions to help me gain quickly working knowledge.
> >
> > I am trying to learn and build a simulation. I want to assign 2D coordinates to objects in a SimPy process so that they are changed in every time step. I am grateful to anyone who looks into my code and tell me comment. Thank you
> >
> >     from SimPy.SimulationTrace import *
> >     import random as RD
> >     import scipy as SP
> >     import math
> >
> >     N=100
> >     r1=0.02
> >     r2=0.03
> >     r3=0.2
> >     r4=0.3
> >
> >     circular=[]
> >     for i in xrange(N):
> >        newpoint=[RD.uniform(0,100),RD.uniform(0,100)]
> >        circular.append(newpoint)
> >
> >     class Point(Process):
> >         def __init__(self,state,rate1,rate2):
> >         Process.__init__(self)
> >         self.state=state
> >         self.rate1=r1
> >         self.rate2=r2
> >
> >
> >        def Move(self):
> >           for j in objects:
> >              j[0] = RD.uniform(j[0]-0.3,j[0]+0.3)
> >              j[1] = RD.uniform(j[1]-0.3,j[1]+0.3)
> >
> >
> >     initialize()
> >     objects=Point('Circular',r1,r2)
> >     activate(objects,objects.Move())
> >     simulate(until=maxTime)
> >
> > There is something wrong in formulating the for statement of "Move function". I want these 2D points to move randomly each step. In other words, the objects of the process are points which have 2D coordinates. A later time I will initiate another objects which have initially different distribution in plane, e.g.
> >
> >     star=[]
> >     for i in xrange(N):
> >        newpoint=[RD.uniform(15,75),RD.uniform(15,75)]
> >        star.append(newpoint)
> >
> > Then at some point I will want to write:
> >
> >     objects=Point('star',r3,r4)
> >     activate(objects,objects.Move())
> >     simulate(until=maxTime)
> >
> > Thus, I do not know how should I write the for statement to be general enough to be able to activate different objects in this process. Or the way I initiated the objects may be wrong in the first place.
> >
> > Also, what if I want to visualize processes?
> >
> >
> >
> > On Wed, Jan 18, 2012 at 10:51 PM, Stefan Scherfke <stefan <at> sofa-rockers.org> wrote:
> >
> > Am 2012-01-18 um 15:02 schrieb Aya al Zarka:
> >
> > >
> > > Hello SimPy community
> > > Excuse me, I would like to ask two questions:
> > >
> > > 1 I want to define a process whose objects transform at some time to another previously defined process and become objects there. Is this possible? what is the name of function that do that then?
> > > In each process they perform different things
> >
> > I’m not really sure if I understand what you mean. Can you give an example, please?
> >
> > >
> > > 2 This is maybe the revese... I want to create a source process which generates objects for a process. But I want them to have a different name and possess different parameters. Is this possible?
> >
> > Dynamically creating objects (with varying parameters) is no problem with Python (or dynamic programming languages in general).
> >
> > >
> > > Thank you very much
> > > - Aya
> >
> > cheers,
> > stefan
> >
> > >
> > > On Wed, Jan 4, 2012 at 5:11 AM, Tony Vignaux <vignaux <at> gmail.com> wrote:
> > > We would certainly recommend matplotlib. It fits very well with this sort of project.
> > >
> > > I hope you have lots of fun with SimPy.
> > >
> > > ====
> > >
> > > Tony  Vignaux
> > >
> > >
> > >
> > >
> > >
> > > On Wed, Jan 4, 2012 at 2:32 PM, Aya al Zarka <aalzarka <at> gmail.com> wrote:
> > > Thank you very much Stefan, and prof. Tony. To make my question clear, after I
> > > build a simulation, I want to answer some questions like how best or how many...
> > > by making some experiments on my simulation and analyzing the results by means of
> > > graphs. I will probably see if I can use matplotlib package for spatial analysis.
> > > My point is that I do not want to spend a lot of my project limited time learning
> > > programming, it is a math project after all... Nice package and nice community,so I
> > > will try to make it.
> > >
> > >
> > > On Tue, Jan 3, 2012 at 10:35 PM, Tony Vignaux <vignaux <at> gmail.com> wrote:
> > > Stefan is right about using Processes for the insects.
> > >
> > > NumPy is certainly powerful but you can distribute the population using the simple distributions found in the random module. In your case two random variates from a uniform distribution.
> > >
> > > Monitors can record data for you and construct histograms. But for proper analysis we would recommend sending results from the simulation to a graphics package or the statistical/graphics package, R.
> > >
> > >
> > > ====
> > >
> > > Tony  Vignaux
> > >
> > >
> > >
> > >
> > >
> > > On Wed, Jan 4, 2012 at 5:19 AM, Aya al Zarka <aalzarka <at> gmail.com> wrote:
> > > Hello SimPy community,
> > >
> > > I am a math graduate student working on a project and need to build a simple agent-based simulation for behavior of insect in a field.
> > >
> > > My question is can I initially distribute the insect population heterogeneously in 2D space using SimPy?
> > > what are options available to analyzing the simulation by means of graphs?
> > >
> > > I do not have a programming background but I think it is easy to learn, I am already working on another python package and find it interesting. I have people around me who are computer science graduates and frequently ask them to learn quickly programming basics.
> > >
> > > please advice me..
> > >
> > > Thank you
> > >
> > > ------------------------------------------------------------------------------
> > > Write once. Port to many.
> > > Get the SDK and tools to simplify cross-platform app development. Create
> > > new or port existing apps to sell to consumers worldwide. Explore the
> > > Intel AppUpSM program developer opportunity. appdeveloper.intel.com/join
> > > http://p.sf.net/sfu/intel-appdev
> > > _______________________________________________
> > > Simpy-users mailing list
> > > Simpy-users <at> lists.sourceforge.net
> > > https://lists.sourceforge.net/lists/listinfo/simpy-users
> > >
> > >
> > >
> > >
> > >
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> >
> >
> >
> > --
> > Forrest Iandola
> > Department of Computer Science
> > University of Illinois at Urbana-Champaign
> > http://www.forrestiandola.com
>
>
>
>
> --
> Forrest Iandola
> Department of Computer Science
> University of Illinois at Urbana-Champaign
> http://www.forrestiandola.com




--
Forrest Iandola
Department of Computer Science
University of Illinois at Urbana-Champaign
http://www.forrestiandola.com
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Joel Welling | 25 Jan 00:28
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A way to get the current proccess, or cancel a process without knowing it?

Hi folks;
  I have a situation where I need to cancel a timing process.  This
happens several layers deep in the code of one or more different
processes, though, so it's easy for me to get the Process instance that
is to be canceled but not easy to get the Process that is to do the
canceling.  One cancels a process with
currentProcess.cancel(targetProcess), so not having easy access to the
current process instance is a problem.
  Could a method be added to Simulation to return the current process, 
or could a cancel() method be added to simulation that would cancel the
process if it is not current or raise an exception if it is current?

Thanks,
-Joel

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Discrete event simulation at NASA / JPL


Hi everyone,

I've been reading a lot about SimPy and I think it might be useful for a major upgrade that we're making to the discrete event simulation system that we use at the NASA Jet Propulsion Laboratory.  As it turns out, we are looking for a talented, driven individual to lead the Modeling and Verification Group in the Planning and Execution Systems Section at the NASA Jet Propulsion Laboratory and I'd like to encourage qualified members of the SimPy community to consider applying.  This group is responsible for designing and developing the software tools that predict the impact that commands will have on our spacecraft, detect commanding errors, and cutting-edge research into modeling for the control of spacecraft systems.  The ideal candidate is a software expert who has led development teams to build sophisticated, modeling-intensive applications, managed all of the details of a large project, and who has an inspiring vision for the future of how to simulate and validate complex command and control systems.  Pay is competitive and relocation to sunny Pasadena, California is included.

Unfortunately, because of the nature of some of the work in the group, we can only consider US Citizens or permanent residents (green card holders).

If you're interested, you can find more details about the position and apply here:  
http://bit.ly/wWEw4R  Please also send your resume and cover letter via email to me directly at jnorris (at) jpl.nasa.gov.  We're also looking for talented developers who might not quite be ready to lead the group but who would love to join the team.

I hope to hear from you soon!

Jeff Norris

----------
Dr. Jeff Norris
Section Manager, Planning and Execution Systems
NASA / Jet Propulsion Laboratory

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Stefan Scherfke | 7 Jan 13:49
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Re: SimPy on x64 bit fails in unit test

Problem seems to be, that sys.maxint (the default capacity for stores, levels, buffers) is a long on
Windows under Python 2, but a normal int unter Linux and Mac OS X. In Python 3, its also an int on Windows.

All tests are passing under Win 7 64bit with Python 3.2.2 64bit. I’ll try to release a fix for Python 2.7
with Windows within the next week.

cheers,
stefan

Am 2012-01-06 um 08:29 schrieb Janiv Amnon:

> Hello,
> Thanks for the follow-up.
> I am running under Windows 7 Enterprise, Service Pack 1,  Intel Core (TM) Duo CPU P8700, 64-bit Operating System.
> 
> Python 2.7.2 (default, Jun 12 2011, 14:24:46) [MSC v.1500 64 bit (AMD64)] on win
> 32
> Regards,
> Amnon
> 
> -----Original Message-----
> From: Stefan Scherfke [mailto:stefan <at> sofa-rockers.org] 
> Sent: Thursday, January 05, 2012 11:22 PM
> To: Janiv Amnon
> Cc: simpy-users <at> lists.sourceforge.net
> Subject: Re: [Simpy-users] SimPy on x64 bit fails in unit test
> 
> Do you run x64 mac, linux or windows? All tests are passing on my Mac and passed when I run them on a 64bit Linux
the last time.
> 
> 
> 
> Am 2012-01-05 um 09:02 schrieb Janiv Amnon:
> 
>> Hello,
>> I downloaded version 2.3, installed with Python 2.7 running x64.
>> The SimPy.test() failed on several tests where the type of capacity was compared to type(1)
>> in Lib.py  (i.e. line 646  " if type(self.capacity) ")
>> By changing the comparison to include type(1L) the tests passed.
>> Would like to know whether this is an install version issue or a defect.
>> I did a google search and saw no other references.
>> 
>> Regards,
>> Amnon
>> ------------------------------------------------------------------------------
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>> costs. Try it free! http://p.sf.net/sfu/Citrix-VDIinabox_______________________________________________
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Stefan Scherfke | 7 Jan 20:05
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Re: SimPy on x64 bit fails in unit test

Problem seems to be, that sys.maxint (the default capacity for stores, levels, buffers) is a long on
Windows under Python 2, but a normal int unter Linux and Mac OS X. In Python 3, its also an int on Windows.

All tests are passing under Win 7 64bit with Python 3.2.2 64bit. I’ll try to release a fix for Python 2.7
with Windows within the next week.

cheers,
stefan

Am 2012-01-06 um 08:29 schrieb Janiv Amnon:

> Hello,
> Thanks for the follow-up.
> I am running under Windows 7 Enterprise, Service Pack 1,  Intel Core (TM) Duo CPU P8700, 64-bit Operating System.
> 
> Python 2.7.2 (default, Jun 12 2011, 14:24:46) [MSC v.1500 64 bit (AMD64)] on win
> 32
> Regards,
> Amnon
> 
> -----Original Message-----
> From: Stefan Scherfke [mailto:stefan <at> sofa-rockers.org] 
> Sent: Thursday, January 05, 2012 11:22 PM
> To: Janiv Amnon
> Cc: simpy-users <at> lists.sourceforge.net
> Subject: Re: [Simpy-users] SimPy on x64 bit fails in unit test
> 
> Do you run x64 mac, linux or windows? All tests are passing on my Mac and passed when I run them on a 64bit Linux
the last time.
> 
> 
> 
> Am 2012-01-05 um 09:02 schrieb Janiv Amnon:
> 
>> Hello,
>> I downloaded version 2.3, installed with Python 2.7 running x64.
>> The SimPy.test() failed on several tests where the type of capacity was compared to type(1)
>> in Lib.py  (i.e. line 646  " if type(self.capacity) ")
>> By changing the comparison to include type(1L) the tests passed.
>> Would like to know whether this is an install version issue or a defect.
>> I did a google search and saw no other references.
>> 
>> Regards,
>> Amnon
>> ------------------------------------------------------------------------------
>> Ridiculously easy VDI. With Citrix VDI-in-a-Box, you don't need a complex
>> infrastructure or vast IT resources to deliver seamless, secure access to
>> virtual desktops. With this all-in-one solution, easily deploy virtual 
>> desktops for less than the cost of PCs and save 60% on VDI infrastructure 
>> costs. Try it free! http://p.sf.net/sfu/Citrix-VDIinabox_______________________________________________
>> Simpy-users mailing list
>> Simpy-users <at> lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/simpy-users
> 

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virtual desktops. With this all-in-one solution, easily deploy virtual 
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