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Charlie Moad | 3 Aug 20:47
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ANN: matplotlib-0.98.3

Matplotlib 0.98.3 is now available for download.  We are not pushing an additional 0.91.x release at this time due to lack of updates to that branch.


- Charlie

=================================================================
2008-08-03 Released 0.98.3 at svn r5947

2008-08-01 Backported memory leak fixes in _ttconv.cpp - MGD

2008-07-31 Added masked array support to griddata. - JSW

2008-07-26 Added optional C and reduce_C_function arguments to
  axes.hexbin().  This allows hexbin to accumulate the values
  of C based on the x,y coordinates and display in hexagonal
  bins. - ADS

2008-07-24 Deprecated (raise NotImplementedError) all the mlab2
           functions from matplotlib.mlab out of concern that some of
           them were not clean room implementations. JDH

2008-07-24 Rewrite of a significant portion of the clabel code (class
  ContourLabeler) to improve inlining. - DMK

2008-07-22 Added Barbs polygon collection (similar to Quiver) for plotting
           wind barbs.  Added corresponding helpers to Axes and pyplot as
           well. (examples/pylab_examples/barb_demo.py shows it off.) - RMM

2008-07-21 Added scikits.delaunay as matplotlib.delaunay.  Added griddata
           function in matplotlib.mlab, with example (griddata_demo.py) in
           pylab_examples. griddata function will use mpl_toolkits._natgrid
           if installed.  - JSW

2008-07-21 Re-introduced offset_copy that works in the context of the
           new transforms. - MGD

2008-07-21 Committed patch by Ryan May to add get_offsets and
           set_offsets to Collections base class - EF

2008-07-21 Changed the "asarray" strategy in image.py so that
           colormapping of masked input should work for all
           image types (thanks Klaus Zimmerman) - EF

2008-07-20 Rewrote cbook.delete_masked_points and corresponding
           unit test to support rgb color array inputs, datetime
           inputs, etc. - EF

2008-07-20 Renamed unit/axes_unit.py to cbook_unit.py and modified
           in accord with Ryan's move of delete_masked_points from
           axes to cbook. - EF

2008-07-18 Check for nan and inf in axes.delete_masked_points().
           This should help hexbin and scatter deal with nans. - ADS

2008-07-17 Added ability to manually select contour label locations.
           Also added a waitforbuttonpress function. - DMK

2008-07-17 Fix bug with NaNs at end of path (thanks, Andrew Straw for
           the report) - MGD

2008-07-16 Improve error handling in texmanager, thanks to Ian Henry
           for reporting - DSD

2008-07-12 Added support for external backends with the
           "module://my_backend" syntax - JDH

2008-07-11 Fix memory leak related to shared axes.  Grouper should
           store weak references. - MGD

2008-07-10 Bugfix: crash displaying fontconfig pattern - MGD

2008-07-10 Bugfix: [ 2013963 ] update_datalim_bounds in Axes not works - MGD

2008-07-10 Bugfix: [ 2014183 ] multiple imshow() causes gray edges - MGD

2008-07-09 Fix rectangular axes patch on polar plots bug - MGD

2008-07-09 Improve mathtext radical rendering - MGD

2008-07-08 Improve mathtext superscript placement - MGD

2008-07-07 Fix custom scales in pcolormesh (thanks Matthew Turk) - MGD

2008-07-03 Implemented findobj method for artist and pyplot - see
           examples/pylab_examples/findobj_demo.py - JDH

2008-06-30 Another attempt to fix TextWithDash - DSD

2008-06-30 Removed Qt4 NavigationToolbar2.destroy -- it appears to
           have been unnecessary and caused a bug reported by P.
           Raybaut - DSD

2008-06-27 Fixed tick positioning bug - MM

2008-06-27 Fix dashed text bug where text was at the wrong end of the
           dash - MGD

2008-06-26 Fix mathtext bug for expressions like $x_{\leftarrow}$ - MGD

2008-06-26 Fix direction of horizontal/vertical hatches - MGD

2008-06-25 Figure.figurePatch renamed Figure.patch, Axes.axesPatch
           renamed Axes.patch, Axes.axesFrame renamed Axes.frame,
           Axes.get_frame, which returns Axes.patch, is deprecated.
           Examples and users guide updated - JDH

2008-06-25 Fix rendering quality of pcolor - MGD
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Sandro Tosi | 3 Aug 23:16
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Re: matplotlib 0.98.3 release candidate, please test

On Sun, Aug 3, 2008 at 20:29, Sandro Tosi <matrixhasu@...> wrote:
> On Sun, Aug 3, 2008 at 20:19, Charlie Moad <cwmoad@...> wrote:
>> I was going to wait on John about the docs, but I went ahead and cut the
>> 0.98.3 release.  The sdist including the docs was 34MB, so I decided not to
>> include them.  This would also cause the binaries to be huge if we included
>> them there as well.  The source release is up/tagged and I will post
>> binaries asap.
>
> Thanks a lot, Charlie!! I'm downloading the brand new tarball and I'll
> upgrade the Debian package short after.

While building (in a clean chroot) the package to upload in Debian, I
noticed some errors at doc creation (I attach the complete log, it
might help you to track the issue), something like:

WARNING: /tmp/buildd/matplotlib-0.98.3/build/lib.linux-x86_64-2.5/matplotlib/axes.py:docstring
of matplotlib.axes.Axes.acorr:35: (ERROR/3) Unexpected indentation.
WARNING: <autodoc>:0: (ERROR/3) Unexpected indentation.
WARNING: /tmp/buildd/matplotlib-0.98.3/build/lib.linux-x86_64-2.5/matplotlib/backend_bases.py:docstring
of matplotlib.backend_bases.FigureCanvasBase.stop_event_loop_default:8:
(WARNING/2) Literal block expected; none found.
WARNING: /tmp/buildd/matplotlib-0.98.3/doc/api/backend_qt4agg_api.rst:5:
(WARNING/2) autodoc can't import/find module
'matplotlib.backends.backend_qt4agg', it reported error: "cannot
import name QtCore",please check your spelling and sys.path
WARNING: /tmp/buildd/matplotlib-0.98.3/doc/api/cbook_api.rst:9:
(WARNING/2) error while formatting signature for
matplotlib.cbook.Xlator: arg is not a Python function
WARNING: /tmp/buildd/matplotlib-0.98.3/build/lib.linux-x86_64-2.5/matplotlib/pyplot.py:docstring
of matplotlib.pyplot.acorr:55: (ERROR/3) Unexpected indentation.
WARNING: /tmp/buildd/matplotlib-0.98.3/build/lib.linux-x86_64-2.5/matplotlib/pyplot.py:docstring
of matplotlib.pyplot.annotate:17: (ERROR/3) Unexpected indentation.
[...]
resolving references...
writing... Error: <stdin>:1: syntax error near line 1
context: digraph >>>  inheritance <<< s {
WARNING: /tmp/buildd/matplotlib-0.98.3/doc/index.rst:None: (WARNING/2)
'dot' returned the errorcode 1
WARNING: unusable reference target found:
https://sourceforge.net/project/admin/?group_id=80706
Error: <stdin>:1: syntax error near line 1
context: digraph >>>  inheritance <<< s {
WARNING: /tmp/buildd/matplotlib-0.98.3/doc/index.rst:None: (WARNING/2)
'dot' returned the errorcode 1
Error: <stdin>:1: syntax error near line 1
context: digraph >>>  inheritance <<< s {
WARNING: /tmp/buildd/matplotlib-0.98.3/doc/index.rst:None: (WARNING/2)
'dot' returned the errorcode 1
Error: <stdin>:1: syntax error near line 1
context: digraph >>>  inheritance <<< s {
WARNING: /tmp/buildd/matplotlib-0.98.3/doc/index.rst:None: (WARNING/2)
'dot' returned the errorcode 1

I don't know if something bad has happened in mpl code or something in
Debian is broken right now (graphviz?), but it would help me if
someone can confirm this is not happening only on my box.

Thanks,
--

-- 
Sandro Tosi (aka morph, Morpheus, matrixhasu)
My website: http://matrixhasu.altervista.org/
Me at Debian: http://wiki.debian.org/SandroTosi
Attachment (matplotlib_0.98.3-1_amd64.build.bz2): application/x-bzip2, 36 KiB
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Eric Firing | 4 Aug 04:41
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part of r5520 is bad for oceanography

Jeff,

http://matplotlib.svn.sourceforge.net/viewvc/matplotlib/trunk/toolkits/basemap/lib/mpl_toolkits/basemap/__init__.py?r1=5520&r2=5534

Lines 2311 and 2312 in changeset 5520 have bitten me badly, and I think 
they are ill-advised.  They are based on the assumption that input to 
rotate_vector, which must be called before m_quiver, should be 
describing a rectangular array of points; but this is not the case for a 
typical oceanographic use-case, plotting current vectors as measured 
along a ship track.  In that case one naturally has 4 1-D vectors of the 
same shape for U, V, X, and Y, and one does not want meshgrid to be 
called on X and Y.  If you want automatic meshgrid, it should be called 
only if X and Y are 1-D *and* their lengths match the 2-D shape of U and V.

Eric

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Eric Firing | 4 Aug 04:43
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Re: part of r5520 is bad for oceanography

Eric Firing wrote:
> Jeff,
> 
> http://matplotlib.svn.sourceforge.net/viewvc/matplotlib/trunk/toolkits/basemap/lib/mpl_toolkits/basemap/__init__.py?r1=5520&r2=5534
> 
> Lines 2311 and 2312 in changeset 5520 have bitten me badly, and I think 

Oops!  I meant 5534; 5520 was the predecessor.

Eric

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Jeff Whitaker | 4 Aug 13:49
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Re: part of r5520 is bad for oceanography

Eric Firing wrote:
> Jeff,
>
> http://matplotlib.svn.sourceforge.net/viewvc/matplotlib/trunk/toolkits/basemap/lib/mpl_toolkits/basemap/__init__.py?r1=5520&r2=5534
>
> Lines 2311 and 2312 in changeset 5520 have bitten me badly, and I think 
> they are ill-advised.  They are based on the assumption that input to 
> rotate_vector, which must be called before m_quiver, should be 
> describing a rectangular array of points; but this is not the case for a 
> typical oceanographic use-case, plotting current vectors as measured 
> along a ship track.  In that case one naturally has 4 1-D vectors of the 
> same shape for U, V, X, and Y, and one does not want meshgrid to be 
> called on X and Y.  If you want automatic meshgrid, it should be called 
> only if X and Y are 1-D *and* their lengths match the 2-D shape of U and V.
>
> Eric
>   

Eric:  Sorry about that.  For some reason, I was thinking that 
rotate_vector only made sense for gridded data, which is obviously 
wrong.  Fixed in r5960.

-Jeff

--

-- 
Jeffrey S. Whitaker         Phone : (303)497-6313
NOAA/OAR/CDC  R/PSD1        FAX   : (303)497-6449
325 Broadway                Boulder, CO, USA 80305-3328

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Michael Droettboom | 4 Aug 15:10

Re: [matplotlib-devel] matplotlib 0.98.3 release candidate, please test

The graphviz failing is my bad.  I failed to test the latex doc build 
(since it never works for me anyway due to a too-old version of latex).  
This is fixed in SVN r5962, and a patch against 
doc/sphinxext/inheritance_diagram.py is attached.

Cheers,
Mike

Sandro Tosi wrote:
> On Sun, Aug 3, 2008 at 20:29, Sandro Tosi <matrixhasu@...> wrote:
>   
>> On Sun, Aug 3, 2008 at 20:19, Charlie Moad <cwmoad@...> wrote:
>>     
>>> I was going to wait on John about the docs, but I went ahead and cut the
>>> 0.98.3 release.  The sdist including the docs was 34MB, so I decided not to
>>> include them.  This would also cause the binaries to be huge if we included
>>> them there as well.  The source release is up/tagged and I will post
>>> binaries asap.
>>>       
>> Thanks a lot, Charlie!! I'm downloading the brand new tarball and I'll
>> upgrade the Debian package short after.
>>     
>
> While building (in a clean chroot) the package to upload in Debian, I
> noticed some errors at doc creation (I attach the complete log, it
> might help you to track the issue), something like:
>
> WARNING: /tmp/buildd/matplotlib-0.98.3/build/lib.linux-x86_64-2.5/matplotlib/axes.py:docstring
> of matplotlib.axes.Axes.acorr:35: (ERROR/3) Unexpected indentation.
> WARNING: <autodoc>:0: (ERROR/3) Unexpected indentation.
> WARNING: /tmp/buildd/matplotlib-0.98.3/build/lib.linux-x86_64-2.5/matplotlib/backend_bases.py:docstring
> of matplotlib.backend_bases.FigureCanvasBase.stop_event_loop_default:8:
> (WARNING/2) Literal block expected; none found.
> WARNING: /tmp/buildd/matplotlib-0.98.3/doc/api/backend_qt4agg_api.rst:5:
> (WARNING/2) autodoc can't import/find module
> 'matplotlib.backends.backend_qt4agg', it reported error: "cannot
> import name QtCore",please check your spelling and sys.path
> WARNING: /tmp/buildd/matplotlib-0.98.3/doc/api/cbook_api.rst:9:
> (WARNING/2) error while formatting signature for
> matplotlib.cbook.Xlator: arg is not a Python function
> WARNING: /tmp/buildd/matplotlib-0.98.3/build/lib.linux-x86_64-2.5/matplotlib/pyplot.py:docstring
> of matplotlib.pyplot.acorr:55: (ERROR/3) Unexpected indentation.
> WARNING: /tmp/buildd/matplotlib-0.98.3/build/lib.linux-x86_64-2.5/matplotlib/pyplot.py:docstring
> of matplotlib.pyplot.annotate:17: (ERROR/3) Unexpected indentation.
> [...]
> resolving references...
> writing... Error: <stdin>:1: syntax error near line 1
> context: digraph >>>  inheritance <<< s {
> WARNING: /tmp/buildd/matplotlib-0.98.3/doc/index.rst:None: (WARNING/2)
> 'dot' returned the errorcode 1
> WARNING: unusable reference target found:
> https://sourceforge.net/project/admin/?group_id=80706
> Error: <stdin>:1: syntax error near line 1
> context: digraph >>>  inheritance <<< s {
> WARNING: /tmp/buildd/matplotlib-0.98.3/doc/index.rst:None: (WARNING/2)
> 'dot' returned the errorcode 1
> Error: <stdin>:1: syntax error near line 1
> context: digraph >>>  inheritance <<< s {
> WARNING: /tmp/buildd/matplotlib-0.98.3/doc/index.rst:None: (WARNING/2)
> 'dot' returned the errorcode 1
> Error: <stdin>:1: syntax error near line 1
> context: digraph >>>  inheritance <<< s {
> WARNING: /tmp/buildd/matplotlib-0.98.3/doc/index.rst:None: (WARNING/2)
> 'dot' returned the errorcode 1
>
> I don't know if something bad has happened in mpl code or something in
> Debian is broken right now (graphviz?), but it would help me if
> someone can confirm this is not happening only on my box.
>
> Thanks,
>   
> ------------------------------------------------------------------------
>
> -------------------------------------------------------------------------
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-- 
Michael Droettboom
Science Software Branch
Operations and Engineering Division
Space Telescope Science Institute
Operated by AURA for NASA


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Sandro Tosi | 4 Aug 15:41
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Re: [Matplotlib-users] matplotlib 0.98.3 release candidate, please test

2008/8/4 Michael Droettboom <mdroe@...>:
> The graphviz failing is my bad.  I failed to test the latex doc build (since
> it never works for me anyway due to a too-old version of latex).  This is
> fixed in SVN r5962, and a patch against doc/sphinxext/inheritance_diagram.py
> is attached.

Err... the attached patch is empty :D Anyhow, I'm subscribed to commit
ml, so I got it:

--- trunk/matplotlib/doc/sphinxext/inheritance_diagram.py
2008-08-04 12:20:25 UTC (rev 5961)
+++ trunk/matplotlib/doc/sphinxext/inheritance_diagram.py
2008-08-04 13:09:02 UTC (rev 5962)
@@ -346,7 +346,7 @@
    parts = node['parts']

    graph_hash = get_graph_hash(node)
-    name = "inheritance%s"
+    name = "inheritance%s" % graph_hash
    pdf_path = os.path.join('_static', name + ".pdf")

    graph.run_dot(['-Tpdf', '-o%s' % pdf_path],

(sorry if gmail wraps it).

I'll apply it once at home and test if works in Debian: Thanks for the
prompt reply!!

Sandro

--

-- 
Sandro Tosi (aka morph, Morpheus, matrixhasu)
My website: http://matrixhasu.altervista.org/
Me at Debian: http://wiki.debian.org/SandroTosi

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Cheung Kwok Fai | 1 Aug 18:08
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candlestick in finance.py

Hi all,
 
   I am implementing a program using the candlestick function which plots some finance data.
   After plotting some graph, I found that it doesn't follow the candlestick charting convention according to:
 
 
I have made some changes to candlestick in finance.py but I have no idea how to modify candlestick2... because I am a python newbie.
I am posting the modified code to the list because I don't know how to get it patched into the source control. Please let me know If I post it to the wrong list.
 
----------------------------------------code section begin-----------------------------

def candlestick(ax, quotes, width=0.2, colorup='k', colordown='r',
                alpha=1.0):

    """

    quotes is a list of (time, open, close, high, low, ...)  tuples.
    As long as the first 5 elements of the tuples are these values,
    the tuple can be as long as you want (eg it may store volume).

    time must be in float days format - see date2num

    Plot the time, open, close, high, low as a vertical line ranging
    from low to high.  Use a rectangular bar to represent the
    open-close span.  If close >= open, use colorup to color the bar,
    otherwise use colordown

    ax          : an Axes instance to plot to
    width       : fraction of a day for the rectangle width
    colorup     : the color of the rectangle where close >= open
    colordown   : the color of the rectangle where close <  open
    alpha       : the rectangle alpha level

    return value is lines, patches where lines is a list of lines
    added and patches is a list of the rectangle patches added
    """


    OFFSET = width/2.0


    lines = []
    patches = []
    prev_close=-1
    for q in quotes:
        t, open, close, high, low = q[:5]
       
        if(prev_close==-1 or close>=prev_close):
            color_edge=colorup
        else:
            color_edge=colordown
        prev_close=close

        if close>=open :
            color_body='w'
            lower = open
            height = close-open
            vline1 = Line2D(
                xdata=(t, t), ydata=(close, high),
                color=color_edge,
                linewidth=0.5,
                antialiased=True,
                )
            vline2 = Line2D(
                xdata=(t, t), ydata=(open, low),
                color=color_edge,
                linewidth=0.5,
                antialiased=True,
                )
           
        else           :
            color_body = color_edge
            lower = close
            height = open-close
            vline1 = Line2D(
                xdata=(t, t), ydata=(close, low),
                color=color_edge,
                linewidth=0.5,
                antialiased=True,
                )
            vline2 = Line2D(
                xdata=(t, t), ydata=(open, high),
                color=color_edge,
                linewidth=0.5,
                antialiased=True,
                )


        rect = Rectangle(
            xy    = (t-OFFSET, lower),
            width = width,
            height = height,
            facecolor = color_body,
            edgecolor = color_edge,
            )
        rect.set_alpha(alpha)


        lines.append(vline1)
        lines.append(vline2)
        patches.append(rect)
        ax.add_line(vline1)
        ax.add_line(vline2)
        ax.add_patch(rect)
    ax.autoscale_view()

    return lines, patches
----------------------------------------code section end-----------------------------

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Sandro Tosi | 5 Aug 17:55
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Re: [Python-modules-team] Bug#493858: matplotlib: FTBFS on GNU/kFreeBSD (fixup of setupext.py needed)

Hi guys,
a gentle kfreebsd porter, submitted a patch against setupext.py to
allow kfreebsd as arch for matplotlib.

I'm going to merge and upload mpl based on it, but he (and me, of
course) would be happy if you could merge this change directly in your
code (since the change is indipendent from Debian).

Thanks,
Sandro

On Tue, Aug 5, 2008 at 14:10, Petr Salinger <Petr.Salinger@...> wrote:
> Package: matplotlib
> Severity: important
> Version: 0.98.3-1
> Tags: patch
> User: glibc-bsd-devel@...
> Usertags: kfreebsd
>
> Hi,
>
> the current version fails to build on GNU/kFreeBSD.
>
> It does not recognize kfreebsd7 based systems.
> Please extend debian/patches/build_fix.patch, see bellow.
>
> It would also be nice if you can ask upstream
> to include similar change.
>
> Thanks in advance
>
> --- debian/patches/build_fix.patch~     2008-08-05 13:44:10.000000000 +0000
> +++ debian/patches/build_fix.patch      2008-08-05 13:44:10.000000000 +0000
> @@ -13,7 +13,7 @@
>       'cygwin' : ['/usr/local', '/usr',],
>       'darwin' : ['/sw/lib/freetype2', '/sw/lib/freetype219', '/usr/local',
>                   '/usr', '/sw', '/usr/X11R6'],
> -@@ -56,8 +56,8 @@
> +@@ -56,8 +56,10 @@
>       'freebsd5' : ['/usr/local', '/usr'],
>       'freebsd6' : ['/usr/local', '/usr'],
>       'sunos5' : [os.getenv('MPLIB_BASE') or '/usr/local',],
> @@ -21,6 +21,8 @@
>  -    'gnukfreebsd6' : ['/usr/local', '/usr'],
>  +    'gnukfreebsd5' : ['/usr'],
>  +    'gnukfreebsd6' : ['/usr'],
> ++    'gnukfreebsd7' : ['/usr'],
> ++    'gnukfreebsd8' : ['/usr'],
>       'aix5' : ['/usr/local'],
>   }

--

-- 
Sandro Tosi (aka morph, Morpheus, matrixhasu)
My website: http://matrixhasu.altervista.org/
Me at Debian: http://wiki.debian.org/SandroTosi

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Sandro Tosi | 5 Aug 19:27
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Re: [matplotlib-devel] matplotlib 0.98.3 release candidate, please test

On Mon, Aug 4, 2008 at 15:41, Sandro Tosi <matrixhasu@...> wrote:
> 2008/8/4 Michael Droettboom <mdroe@...>:
>> The graphviz failing is my bad.  I failed to test the latex doc build (since
>> it never works for me anyway due to a too-old version of latex).  This is
>> fixed in SVN r5962, and a patch against doc/sphinxext/inheritance_diagram.py
>> is attached.
> I'll apply it once at home and test if works in Debian: Thanks for the
> prompt reply!!

Patch applied and matplotlib 0.98.3 version has just been uploaded in
Debian: thank you guys for the support!!

A mail to Debian Release Team has been sent[1], let's see if they'll
accept it for Lenny.

Cheers,
Sandro

[1] http://lists.debian.org/debian-release/2008/08/msg00258.html

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-- 
Sandro Tosi (aka morph, Morpheus, matrixhasu)
My website: http://matrixhasu.altervista.org/
Me at Debian: http://wiki.debian.org/SandroTosi

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Gmane