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Claudio Rossi | 1 May 2010 12:07
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Problem with ontology URI in Protégé 3.4.4

Hello,
when I import an ontology (http://sweet.jpl.nasa.gov/2.0/astroStar.owl) in Protégé 3.4.4, all its resources are shown with their complete URIs. Is there a way to change this visualization behaviour? I'd like to see in P3.4.4 only something like [namespace]:[resource_name], which is what I can see loading the same ontology in Protégé 4.1alpha.

Thanks and best regards.
 
  Claudio

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Kosala | 1 May 2010 16:49
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Protege 3.4 and Manchester Syntax

Hi,
I am new to Protege.

I developed a small ontology using Protege 3.4, and its inbuilt SWRL rules Tab.
Can I view this ontology file in Manchester OWL syntax?

I also developed the same ontoogy in Protege 4.0.
Now I can see manchester syntax, but I could not find SWRL rules Tab. I have no idea how to develop rules with version 4.

Can some help me to clear this confusion?


Thank you
Kosala

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Melissa Haendel | 1 May 2010 17:29
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auto ID plugin-improvement request

Hi all,
While using the autoID plugin, it would be terrific if one could specify the range of ID values.

Thanks,
Melissa 

Dr. Melissa Haendel

Lead Curator 
eagle-i Networking Research Resources
Oregon Health & Science University
haendel <at> ohsu.edu
skype: melissa.haendel
503-407-5970

 

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Melissa Haendel | 1 May 2010 17:27
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Re: New Plugin: The BioPortal Reference Widget - insert external references in the ontology


> Samson Tu <swt <at> stanford.edu> writes:

> 
> 
> I agree that it's it would be extremely useful to have the reference be 
> the URI of the imported concept.
> 
> I'd like to suggest further that, instead of a "slot widget," Protege 
> supports a tab widget for searching and referencing terms from Bioportal 
> so that we don't necessarily have to use the reference as the value of a 
> property.
> 
> Samson
> 
> Alan Ruttenberg wrote:
> ...
> > The suggestion is that it isn't part of the external reference. The
> > proposal is that it *is* the reference.
> > 
> 
> _______________________________________________
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> 
> Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03

Hi all,
Its been a while since this thread.
I would like to resurrect this request for a plugin in Protege and/or bioportal
functionality that can directly import ontology terms from one ontology into
another, specifically utilizing the MIREOT principle described in this document:
http://docs.google.com/View?id=dzprnmw_24cp3693dd

We require importing classes and axioms from other ontologies and would like to
reuse their URIs directly. I believe there is an increasing need for this to
prevent proliferation of URIs and the Protege/Bioportal team is positioned to
help promote reuse and interoperability of ontologies. 

Cheers,
Melissa Haendel
> 
> 

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Jean-Marc Vanel | 1 May 2010 18:08
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Re: Protege 3.4 and Manchester Syntax



2010/5/1 Kosala <kosalayb <at> gmail.com>
Hi,
I am new to Protege.

I developed a small ontology using Protege 3.4, and its inbuilt SWRL rules Tab.
Can I view this ontology file in Manchester OWL syntax?

I also developed the same ontoogy in Protege 4.0.
Now I can see manchester syntax, but I could not find SWRL rules Tab. I have no idea how to develop rules with version 4.

In Protégé 4, the rules view is accessible through 
View / Ontology views / Rules

There is currently no forward chaining engine like the Jess tab in Protégé 4, but the rules are taken in account by the Pellet reasonner; see the SWRL Language FAQ by Martin O'Connor, the author of  the Jess tab .

A nice way to develop rules and ontologies in Protégé 4.0.X is to use the ACE View plugin, where you enter your rules in formal english, e.g. :

If a busLine X1 has-as-departure a town X2,
and X1 has-as-arrival a town X4,
and the town X4 belongs-to a country X3,
and the town X2 belongs-to the country X3
then the busLine X1 is a nationalBusLine .


Can some help me to clear this confusion?


Thank you
Kosala

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Patrick Browne | 2 May 2010 13:04
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Re: OWL-S Editor Protege 3.4.4 Problem

Marcin
I got owlseditor-build23 to work with Protege 3.2.1.
I just placed the extracted files in:
C:\Program Files\Protege_3.2.1\plugins\com.sri.owlseditor

Pat

Marcin Choinski wrote:
> Hi,
> 
> I saw you had a problem with running OWL-S Editor Protege plugin with
> Protege 3.4.4.
> 
> I have the same problem and cannot find a solution to it... Did you succeed
> with running it? I would be grateful for help.
> 
> Maybe it works with some previous Protege versions?
> 

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Timothy Redmond | 2 May 2010 17:07
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Re: auto ID plugin-improvement request

On 05/01/2010 08:29 AM, Melissa Haendel wrote:
Hi all,
While using the autoID plugin, it would be terrific if one could specify the range of ID values.
One question about this feature - what happens when one gets outside the range?  Should the autoId plugin stop supplying ids and force the user to supply a new range?

-Timothy

Thanks,
Melissa 

Dr. Melissa Haendel

Lead Curator 
eagle-i Networking Research Resources
Oregon Health & Science University
haendel <at> ohsu.edu
skype: melissa.haendel
503-407-5970


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Melissa Haendel | 2 May 2010 18:05
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Re: auto ID plugin-improvement request

yes I think this would be very reasonable behavior.

-melissa

On May 2, 2010, at 8:07 AM, Timothy Redmond wrote:

On 05/01/2010 08:29 AM, Melissa Haendel wrote:
Hi all,
While using the autoID plugin, it would be terrific if one could specify the range of ID values.
One question about this feature - what happens when one gets outside the range?  Should the autoId plugin stop supplying ids and force the user to supply a new range?

-Timothy

Thanks,
Melissa 

Dr. Melissa Haendel

Lead Curator 
eagle-i Networking Research Resources
Oregon Health & Science University
haendel <at> ohsu.edu
skype: melissa.haendel
503-407-5970


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<ATT00001..txt>

Dr. Melissa Haendel

Lead Curator 
eagle-i Networking Research Resources
Oregon Health & Science University
haendel <at> ohsu.edu
skype: melissa.haendel
503-407-5970

 

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susu hlaing | 3 May 2010 10:00
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plugin requirement

hello

there is no plugin package for "uk.ac.manchester.owl.tutorial.LabelExtractor" to run program in eclipse

if u have any idea , pls guide me

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Paulo_ip | 3 May 2010 14:01
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Ontology getSubClass and getProperties


Hi,

I would like an advice on what to use a reasoner, SPARQL, SWRL or simply OWL
Walker?

I have an ontology with

Classes:
Class: Device
SubClass: LightDevice

Class:Service
SubClass: SwitchPower

Class: Action
SubClass: TurnOn
SubClass: TurnOFF

Properties:
Device hasService Service
Service hasAction Action

LightDevice hasService SwitchPower
SwitchPower hasAction TrunOn
SwitchPower hasAction TrunOFF

While I am applying some ontology matching, I want to walk through some
classes again.
For instance, if I am treating the SubClass  SwitchPower, I want to be able
to retrieve information from the ontology about this subclass.
I want to know what Device it belongs to (lightDevice) and what actions it
have (TrunOff and TrunOn)

Can anybody can give me an advice on what can I use to do so ? and how can I
use it ?

I looked on the OWL Walker
but couldn't actually figure out how to adapt it to my use case. And maybe
there is a simpler and more efficient way to do so ?

Thanks in advance,
Paulo.

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