problems about beangenarator for owl ontology

protege web applcation error

I am trying to hava a test with protege-webapplication.
I installed the protege application files under the Tomcat/webapps,
and copy all of the jar file to Tomcat/webapps/webprotege/WEB-INF/lib,
however,it was failured to run on web.there are error message,
I hope someone would like help me to settle the problems.

javax.servlet.ServletException: org/w3c/dom/range/DocumentRange
	org.apache.jasper.servlet.JspServlet.service(JspServlet.java:272)
	javax.servlet.http.HttpServlet.service(HttpServlet.java:802)

reason:

java.lang.NoClassDefFoundError: org/w3c/dom/range/DocumentRange
	java.lang.ClassLoader.defineClass1(Native Method)
	java.lang.ClassLoader.defineClass(Unknown Source)
	java.security.SecureClassLoader.defineClass(Unknown Source)
	org.apache.catalina.loader.WebappClassLoader.findClassInternal(WebappClassLoader.java:1650)
	org.apache.catalina.loader.WebappClassLoader.findClass(WebappClassLoader.java:856)
	org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1305)
	org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1187)
	java.lang.ClassLoader.loadClassInternal(Unknown Source)
	org.apache.xerces.jaxp.DocumentBuilderImpl.<init>(DocumentBuilderImpl.java:98)
	org.apache.xerces.jaxp.DocumentBuilderFactoryImpl.newDocumentBuilder(DocumentBuilderFactoryImpl.java:87)
	org.apache.jasper.xmlparser.ParserUtils.parseXMLDocument(ParserUtils.java:92)
	org.apache.jasper.compiler.JspConfig.processWebDotXml(JspConfig.java:76)
	org.apache.jasper.compiler.JspConfig.init(JspConfig.java:197)
	org.apache.jasper.compiler.JspConfig.findJspProperty(JspConfig.java:249)
	org.apache.jasper.compiler.Compiler.generateJava(Compiler.java:103)
	org.apache.jasper.compiler.Compiler.compile(Compiler.java:286)
	org.apache.jasper.compiler.Compiler.compile(Compiler.java:267)
	org.apache.jasper.compiler.Compiler.compile(Compiler.java:255)
	org.apache.jasper.JspCompilationContext.compile(JspCompilationContext.java:563)
	org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:293)
	org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:314)
	org.apache.jasper.servlet.JspServlet.service(JspServlet.java:264)
	javax.servlet.http.HttpServlet.service(HttpServlet.java:802)

Thanks for any help advanced.
li.

*************************************************
　Muroran Institute of Technology
　Satellite Venture Business Laboratory(SVBL)
　Li LinFu
  philips <at> mail.svbl.muroran-it.ac.jp
  Tel: (81)0143-46-5956 Fax: (81)0143-46-5959
*************************************************

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Re: Importing Ontology

Yes please.  Having the original file is always the best way of tracking 
bugs.

Holger

Busa wrote:
> Can I send you the Importing and Imported Ontology (owl files) and the 
> complete Exception dump?
> 
> "Holger Knublauch" <holger <at> knublauch.com> ha scritto nel messaggio 
> news:4366557C.8010807 <at> knublauch.com...
> 
> 
> Busa wrote:
> 
>>Hi. I've this situation.
>>I have an ontology A that refer to an ontology B by import tag 
>>(owl:imports).
>>
>>Using Protegè OWL-API I'm building Ontology B and I have to import and 
>>LOAD in the model (using ProtegeOWLParser.addImport) the ontology A.
>>The problem is that when I try to do the ProtegeOWLParser.addImport I get 
>>an Excpetion about "Duplicate Frame name xxx" and It seems that becouse of 
>>the import of A from B when I try to load B in the A model It find 
>>duplications.
> 
> 
> What is the duplicate frame name?  Could you clarify the structure of
> the files?  It certainly should work and we'd be happy to fix any bugs
> that you can point us to.
> 
> Holger
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> 
> 
> 
> 
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Re: problems about beangenarator for owl ontology

Roger wrote:
> Dear all,
> 
> 
> I need to use beangenerator in Protege 3.1 
> http://www.acklin.nl/page.php?id=34
> to generate java class to an owl ontology in JADE, there is the
> need to include the OWLSimpleJADEAbstractOntology as you can read.
> 
> But having an OWL File based project in Protege 3.1  I can't include 
> another OWL ontology. It seems that there is no function for including
> another OWL-File based Protege project as in version 2.1.2 Protege
> (working with text-based projects).

The core Protege project inclusion has been replaced with an owl:imports
mechanism (according to the OWL spec) in the OWL Plugin.  So please use
the metadata tab to add imported namespaces.

> 
> Does anyone have the experience of using beangenerator for owl ontology
> in protege3.1? Please help me.

If you don't get help here, you may want to contact the authors
directly.  But it's great to see that their plugin now also works for
OWL projects!

Holger
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Re: problems about beangenarator for owl ontology

Roger wrote:

> Dear all,
>
>
> I need to use beangenerator in Protege 3.1
> http://www.acklin.nl/page.php?id=34
> to generate java class to an owl ontology in JADE, there is the
> need to include the OWLSimpleJADEAbstractOntology as you can read.
>
> But having an OWL File based project in Protege 3.1 I can't include
> another OWL ontology. It seems that there is no function for including
> another OWL-File based Protege project as in version 2.1.2 Protege
> (working with text-based projects).
>
> Does anyone have the experience of using beangenerator for owl ontology
> in protege3.1? Please help me.
>
> Sincerely,
> Roger
>
> -----
> Work like you don't need the money.
> Love like you've never been hurt.
> Dance like nobody's watching.
> Sing like nobody's listening.
> Live like it's Heaven on Earth.

Within our project someone has also tried to use the bean generator for
protege 3.0. This did not work very well ( I do not know the details
though). So for our simple JADE ontology we have used Protege 2.1.2. If
you get the bean generator to work for Protege 3.1, I would be very
interested as well.

Regards,
Jasper
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bugs in open unsupported file type?

New Protege 3.2 beta build: Wizards fixed

Hi All,

Thanks to Jennifer at Stanford, there is now a new Protege 3.2 beta 
distribution build (234) available in which the wizards are fixed.
As far as I know, this is the only difference, so if you don't use 
wizards don't worry.
Apologies again,

Nick

--

-- 

Nick Drummond

http://www.cs.man.ac.uk/~drummond/ <http://www.cs.man.ac.uk/%7Edrummond/>
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Re: bugs in open unsupported file type?

Well, yes - this would be a bug (outside of the OWL realm).

BTW, we hope to have an option to load .owl files directly in the
future, without having to go through a .pprj file.

Holger

Roger wrote:
> Hi, Holger
>  
> I found an interesting problem in protege3.1.
>  
> Select "open project", then you don't choose a .pprj file; you can 
> choose an other typed file (e.g., .zip).
> Of course,protege report an exception information. But then, you can do 
> nothing except typing "ctrl + C" in the cmd window.
> I am using Winxp + sp2.
>  
> I understand it seems strange or stupid to do so, but I think it is a 
> bug indeed.
>  
> Regards,
> Roger
> 
> -----
> Work like you don't need the money.             
> Love like you've never been hurt.           
> Dance like nobody's watching.                  
> Sing like nobody's listening.                  
> Live like it's Heaven on Earth.
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ezOWL and OWLPlugin

Hi every one. I get this exception every time I try to load the ezOWLTab 
from Configurations.
Did anyone know whay it look for that class that is not present?

Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: 
edu/stanford/smi/protegex/owl/ui/clsproperties/PropertiesAtClassWidget
 at b.a.a.c.a.initialize(a.java)
 at edu.stanford.smi.protege.widget.WidgetUtilities.createTabWidget(Unknown 
Source)
 at edu.stanford.smi.protege.ui.ProjectView.addTab(Unknown Source)
 at edu.stanford.smi.protege.ui.ProjectView.addEnabledTabs(Unknown Source)
 at edu.stanford.smi.protege.ui.ProjectView.synchronizeTabbedPane(Unknown 
Source)
 at edu.stanford.smi.protege.ui.ProjectView.reloadPartial(Unknown Source)
 at edu.stanford.smi.protege.ui.ProjectView.reload(Unknown Source)
 at edu.stanford.smi.protege.ui.ProjectManager.reloadUI(Unknown Source)
 at 
edu.stanford.smi.protege.ui.ProjectManager.configureProjectRequest(Unknown 
Source)
 at edu.stanford.smi.protege.action.ConfigureProject.actionPerformed(Unknown 
Source)
 at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
 at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
 at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
 at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
 at javax.swing.AbstractButton.doClick(Unknown Source)
 at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
 at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown 
Source)
 at java.awt.Component.processMouseEvent(Unknown Source)
 at javax.swing.JComponent.processMouseEvent(Unknown Source)
 at java.awt.Component.processEvent(Unknown Source)
 at java.awt.Container.processEvent(Unknown Source)
 at java.awt.Component.dispatchEventImpl(Unknown Source)
 at java.awt.Container.dispatchEventImpl(Unknown Source)
 at java.awt.Component.dispatchEvent(Unknown Source)
 at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
 at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
 at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
 at java.awt.Container.dispatchEventImpl(Unknown Source)
 at java.awt.Window.dispatchEventImpl(Unknown Source)
 at java.awt.Component.dispatchEvent(Unknown Source)
 at java.awt.EventQueue.dispatchEvent(Unknown Source)
 at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)
 at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
 at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
 at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
 at java.awt.EventDispatchThread.run(Unknown Source)

I need ezOWL but I can't use it.
The plugins is loaded at start up wotout any problem....is only the Tab tha 
doesn't work.

Some help?
Thx.

Busa 

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Re: ezOWL and OWLPlugin

ezOWL does no longer seem to be supported.  The last available version 
is for Protege 2.1(193) & OWL Plugin 1.1(110) as shown on its web site. 
  You could try to find the matching Protege versions in the history 
section of the download page.

Holger

Busa wrote:
> Hi every one. I get this exception every time I try to load the ezOWLTab 
> from Configurations.
> Did anyone know whay it look for that class that is not present?
> 
> 
> Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: 
> edu/stanford/smi/protegex/owl/ui/clsproperties/PropertiesAtClassWidget
>  at b.a.a.c.a.initialize(a.java)
>  at edu.stanford.smi.protege.widget.WidgetUtilities.createTabWidget(Unknown 
> Source)
>  at edu.stanford.smi.protege.ui.ProjectView.addTab(Unknown Source)
>  at edu.stanford.smi.protege.ui.ProjectView.addEnabledTabs(Unknown Source)
>  at edu.stanford.smi.protege.ui.ProjectView.synchronizeTabbedPane(Unknown 
> Source)
>  at edu.stanford.smi.protege.ui.ProjectView.reloadPartial(Unknown Source)
>  at edu.stanford.smi.protege.ui.ProjectView.reload(Unknown Source)
>  at edu.stanford.smi.protege.ui.ProjectManager.reloadUI(Unknown Source)
>  at 
> edu.stanford.smi.protege.ui.ProjectManager.configureProjectRequest(Unknown 
> Source)
>  at edu.stanford.smi.protege.action.ConfigureProject.actionPerformed(Unknown 
> Source)
>  at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
>  at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
>  at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
>  at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
>  at javax.swing.AbstractButton.doClick(Unknown Source)
>  at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
>  at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown 
> Source)
>  at java.awt.Component.processMouseEvent(Unknown Source)
>  at javax.swing.JComponent.processMouseEvent(Unknown Source)
>  at java.awt.Component.processEvent(Unknown Source)
>  at java.awt.Container.processEvent(Unknown Source)
>  at java.awt.Component.dispatchEventImpl(Unknown Source)
>  at java.awt.Container.dispatchEventImpl(Unknown Source)
>  at java.awt.Component.dispatchEvent(Unknown Source)
>  at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
>  at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
>  at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
>  at java.awt.Container.dispatchEventImpl(Unknown Source)
>  at java.awt.Window.dispatchEventImpl(Unknown Source)
>  at java.awt.Component.dispatchEvent(Unknown Source)
>  at java.awt.EventQueue.dispatchEvent(Unknown Source)
>  at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)
>  at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
>  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
>  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
>  at java.awt.EventDispatchThread.run(Unknown Source)
> 
> I need ezOWL but I can't use it.
> The plugins is loaded at start up wotout any problem....is only the Tab tha 
> doesn't work.
> 
> Some help?
> Thx.
> 
> Busa 
> 
> 
> 
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