chab nasri | 2 May 2011 08:09
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Re: Integration of a plug-in in the editor Protege version 3.4.1


Hello,

2011/4/30 Thomas Russ <tar <at> isi.edu>

On Apr 29, 2011, at 1:13 PM, chab nasri wrote:

Hello,

2011/4/28 Thomas Russ <tar <at> isi.edu>

On Apr 27, 2011, at 5:53 PM, chab nasri wrote:

Protege reads the set of plugins from the plugins directory.  So you need to make your plugin into a jar file and place it in the Protege plugins directory.  You must have made the MANIFEST.MF file correctly because your plugin is showing up when you run it in eclipse.

Il faut que vous avez une correct fichier "plugin.properties".    Peut être avec:

plugin.component.count=1
plugin.component.name.0=SASO Tab
plugin.dependency.count=1
plugin.dependency.0=edu.stanford.smi.protegex.owl




- How we create the file "plugin.properties" ?

You can create it with any text editor of your choice.


Yes
, I created the file "plugin.properties" and I placed it in the directory C: \ Program Files \ Protege_3.4.1 \ plugins \ myTabs


 



- What is the content of the file "plugin.properties" knowing my jar file is named "DisplayNameTab.jar"which is placed under the directory C: \ Program Files \ Protege_3.4.1 \ plugins \ myTabs ?

See http://protege.stanford.edu/doc/dev.html#plugins
and http://protegewiki.stanford.edu/wiki/PluginDependencies




- Where exactly you put the file "plugin.properties" ?

It needs to go into the directory that holds your plugin code.  In your case, this would by plugins\myTabs


 Here are the contents of my file "plugin.properties" :

plugin.component.count=1
plugin.component.name.0=DisplayNameTab Tab
plugin.dependency.count=1
plugin.dependency.0=edu.stanford.smi.protegex.owl

I do not know is that content is correct or not ?
why we add this file ?
It is necessary to add the file "plugin.properties" such as that my plugin does not depend on other plugins ?

But, I have the same problem when I run Protégé I can not find my plugin "DisplayNameTab" among the list of existing plugin.

I inform you that I made a simple export my project into a jar file named "DisplayNameTab" without any additional configuration as described in the following link :
http://protegewiki.stanford.edu/wiki/SetUpEclipseForPlugin

Are there any other configuration to do in my project and which are not shown in this link ?

Thanks.



Thanks


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Jdk for WebProtege

I installed Tomcat 5.5 with jdk1.5.0_10 and dropped in the webprotege.war.  I get back a
"java.lang.UnsupportedVersionError: Bad version number in .class file" error.  I tried dropping it
into JBoss 4.0.5 also, with the same result.  What jdk does the webprotege.war operate under?

Tracy M. Safran
Contractor - SAIC Frederick
EVS support
301-402-1537

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Bill Dickinson | 2 May 2011 21:33
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Re: Jdk for WebProtege

On 5/2/2011 2:15 PM, Safran, Tracy (NIH/NCI) [C] wrote:
> I installed Tomcat 5.5 with jdk1.5.0_10 and dropped in the webprotege.war.  I get back a
"java.lang.UnsupportedVersionError: Bad version number in .class file" error.  I tried dropping it
into JBoss 4.0.5 also, with the same result.  What jdk does the webprotege.war operate under?
>
> Tracy M. Safran
> Contractor - SAIC Frederick
> EVS support
> 301-402-1537
>
> _______________________________________________
> protege-discussion mailing list
> protege-discussion <at> lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>
> Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03
Tracy, it looks like jdk1.5.0_16 currently.  See this link: 
http://protegewiki.stanford.edu/wiki/WebProtegeDevelopersGuide

Bill
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Samson Tu | 2 May 2011 23:09
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Re: inferred knowledge

Nikos needs to clarify what he meant by asserting "inferred facts" (done 
by his supervisor's JessTab button).

I referred him to the Protege mailing list because he said he is using 
DL classification. If he saves the DL inferred facts and map them to 
Jess, then Jess rules should use these 'inferred facts' like any other fact.

So is the problem saving DL inferred fact? Or is the problem mapping 
them to Jess? Without saying what the "assert all inferred fact" button 
does, we can't really help you.

Samson

On 4/27/11 8:25 AM, Timothy Redmond wrote:
>
> Your post was fine. I didn't get to this question right away because I
> don't know the answer yet. I know how to save inferred knowledge from an
> owl classification but I don't know a lot about the jess tab. I think
> though that there are resources at Stanford who can help me.
>
> -Timothy
>
> On 04/27/2011 03:07 AM, nikos erinis wrote:
>> hi guys,
>>
>> i posted something last week about inferred and asserted knowledge and
>> if it is possible for someone to access it or convert it.
>> i got no answer and i am not sure if i sent the e-mail because i had
>> some difficulties an the beginning.
>> anyway, i am using protege 3.4.4 with jesstab and i want to make a
>> simple rule-based-system for my master-thesis.
>> i already did two simple rules but it doesn't seem to work.
>> the one rule should "spit out" all the instances of a class "human"
>> and say that for example bob is human.
>> the second rule should say that bob is a "man" as a subclass of "human".
>>
>> my supervisor programmed a modified jesstab with two extra buttons.
>> the one button is to assert all inferred facts and the second button
>> to execute a file with all the rules inside.
>> everything works fine but only for one time, the first time. if i try
>> to assert again than it doesn't work anymore.
>>
>> what can we do?
>>
>> thanks for your time
>>
>>
>> _______________________________________________
>> protege-discussion mailing list
>> protege-discussion <at> lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>>
>> Instructions for unsubscribing:http://protege.stanford.edu/doc/faq.html#01a.03
>
>
>
> _______________________________________________
> protege-discussion mailing list
> protege-discussion <at> lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
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Qingmai Wang | 3 May 2011 03:06
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SQWRL query tab for complex individual name

Hi


I am using Sqwrl query tab to query an LUBM ontology, in which the individuals name are always in the format of "http://www.Department12.University0.edu/.........../............". In this case, the query tab returns error such as

"unknown jess.Value parameter of type RU.SYMBOL with value: http://www.Department12.University0.edu/AssociateProfessor2/Publication9;
 expecting an individual name, a class name, a property name, true, false, or an unbound variable: built-in argument error."

Once I change some of the individual names to some simple names with only letters and numbers, the query then works properly if the query result only contains those individuals with simple names.

However I can't manually change all the individuals name to simple name since there are thousands of individuals. I am just wondering is there any method to overcome this problem?

Best regards

Qingmai 
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nikos erinis | 3 May 2011 08:55

Re: inferred knowledge

hi Samson,


you are right and your comment was very precise...
what i mean is that when i just map the facts with (mapclass) and when i run the reasoner from protege the programm reacts different.
i am still trying to figure it out and i am experimenting with everything i can. the button from my supervisor just runs automatically the reasoner.

thank you very much for your time and sharing your knowledge

Nikos

On Mon, May 2, 2011 at 11:09 PM, Samson Tu <swt <at> stanford.edu> wrote:
Nikos needs to clarify what he meant by asserting "inferred facts" (done by his supervisor's JessTab button).

I referred him to the Protege mailing list because he said he is using DL classification. If he saves the DL inferred facts and map them to Jess, then Jess rules should use these 'inferred facts' like any other fact.

So is the problem saving DL inferred fact? Or is the problem mapping them to Jess? Without saying what the "assert all inferred fact" button does, we can't really help you.


Samson



On 4/27/11 8:25 AM, Timothy Redmond wrote:

Your post was fine. I didn't get to this question right away because I
don't know the answer yet. I know how to save inferred knowledge from an
owl classification but I don't know a lot about the jess tab. I think
though that there are resources at Stanford who can help me.

-Timothy

On 04/27/2011 03:07 AM, nikos erinis wrote:
hi guys,

i posted something last week about inferred and asserted knowledge and
if it is possible for someone to access it or convert it.
i got no answer and i am not sure if i sent the e-mail because i had
some difficulties an the beginning.
anyway, i am using protege 3.4.4 with jesstab and i want to make a
simple rule-based-system for my master-thesis.
i already did two simple rules but it doesn't seem to work.
the one rule should "spit out" all the instances of a class "human"
and say that for example bob is human.
the second rule should say that bob is a "man" as a subclass of "human".

my supervisor programmed a modified jesstab with two extra buttons.
the one button is to assert all inferred facts and the second button
to execute a file with all the rules inside.
everything works fine but only for one time, the first time. if i try
to assert again than it doesn't work anymore.

what can we do?

thanks for your time


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Nada Bajnaid | 3 May 2011 09:46
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Reasoning an ontology: jess bridge limitations

Hello
 
I'm building API as part of my PhD. When I try to infer the jess bridge I got the following error
 
Jess reported an error in routine Jesp.parseFact.Message: Expected ')' at token '~'.
 
 
when I try to run the jess tab at the SWRL-tab in protege I got the follwoing warrning:
 
A significant limitation of the current bridge is that it does not represent all OWL
axioms when transferring knowledge from an OWL ontology to Jess. The exceptions are the basic
class, property and individual axioms, such as, for example, rdfs:subClassOf and rdfs:subPropertyOf, and
OWL axioms owl:sameAs, owl:differentFrom, owl:allDifferent, owl:equivalentClass, and owl:equivalentProperty.
As a result, the Jess inferencing mechanisms do not know about the remaining OWL axioms.
To ensure consistency, a reasoner should be run on an OWL knowledge base before SWRL rules and OWL
knowledge are transferred to Jess. Also, if inferred knowledge from Jess is inserted back into an OWL
ontology, a reasoner should again be executed to ensure that the new knowledge does not
conflict with OWL axioms in that knowledge base.
cf. http://protege.cim3.net/cgi-bin/wiki.pl?SWRLRuleEngineBridgeFAQ#nid6QL for more details.
Exception importing SWRL rules and OWL knowledge: edu.stanford.smi.protegex.owl.swrl.bridge.exceptions.SWRLBuiltInBridgeException: error exporting OWL axiom edu.stanford.smi.protegex.owl.swrl.bridge.impl.OWLDeclarationAxiomImpl <at> c50e46: Jess reported an error in routine Jesp.parseFact.
  Message: Expected ')' at token '~'.
  Program text: ( assert ( LearningObject ( name http://www.ece.cmu.edu/ ~  at line 1 in file <eval pipe>.
 
Anu idea on how this can be fixed? Shall I use another easoner (ex: Racer, Pellet) if so what is the best and if I use it do I still need to use a jess bridge in my code?
 
Please advise me as I spent a lot of time searching and trying but could not fix it
 
Thanks in advance
Nada
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Jinjun Chen | 3 May 2011 15:53
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Call for papers and workshops - CGC2011: International Conference on Cloud and Green Computing Dec. 12-14, Sydney, Australia

Call for papers and workshops: CGC2011 - International Conference on Cloud and Green  Computing, Dec. 12-14, Sydney, Australia.

Website: http://www.swinflow.org/confs/cgc2011/

Key dates:

Workshop Proposal: June 1, 2011 (to workshop chairs listed on the website)
Submission Deadline: July 15, 2011 (UTC/GMT time 23:59)
Authors Notification: September 15, 2011
Final Manuscript Due: October 3, 2011
Registration Due: October 3, 2011


===========
Introduction

Cloud computing is positioning itself as a new emerging platform for delivering information
infrastructures and resources as IT services. Customers (enterprises or individuals) can
then provision and deploy these services in a pay-as-you-go fashion and in a convenient way
while saving huge capital investment in their own IT infrastructures. It has evoked a high
degree of interest internationally with many challenges such as security and privacy
remaining open. Green computing, in general, aims to enable computing and IT
infrastructures to be energy efficient and environmentally friendly. With dramatically
increasing demand on computing and storage systems, IT infrastructures have been scaled
tremendously which results in huge amount of energy consumption, heat dissemination,
greenhouse emission and even part of climate change. As such, green computing has come to
the picture seeking solutions for computing and IT infrastructures to be energy efficient
and environmentally friendly.


While customers can enjoy green atmosphere as well as cost saving and convenience because
cloud computing accommodates their IT infrastructures in the cloud, how to green the cloud
becomes increasingly challenging and extremely important in terms of global energy
efficiency and environmental sustainability. 
 

CGC (Cloud and Green Computing) is created to provide a prime international forum for both
researchers, industry practitioners and environment experts to exchange the latest
fundamental advances in the state of the art and practice of Cloud computing and Green
computing as well as joint-venture and synergic research and development across both areas.
 

Scope and Topics

Topics of particular interest include, but are not limited to:

·   Fundamentals of cloud computing
·   Architectural cloud models
·   Programming cloud models
·   Provisioning/pricing cloud models 
·   Data storage and computation in cloud computing
·   Resource and large-scale job scheduling in cloud computing
·   Security, privacy, trust, risk in cloud computing
·   Fault tolerance and reliability in cloud computing
·   Access control to cloud computing
·   Resource virtualisation
·   Monitoring and auditing in cloud
·   Scalable and elastic cloud services
·   Social computing and impacts on the cloud
·   Innovative HCI and touch-screen models and technologies to cloud
·   Mobile commerce, handheld commerce and e-markets on cloud
·   Intelligent/agent-based cloud computing
·   Migration of business applications to cloud
·   Cloud use case studies
·   Fundamentals of green computing
·   Energy aware software, hardware and middleware
·   Energy efficient IT architecture
·   Energy efficient resource scheduling and optimisation
·   Energy efficient clustering and computing
·   Large-scale energy aware data storage and computation
·   Energy aware control, monitoring and HCI design
·   Energy efficient networking and operation
·   Energy efficient design of VLSI and micro-architecture
·   Intelligent energy management
·   Green data centers
·   Energy aware resource usage and consumption
·   Smart power grid and virtual power stations
·   Energy policy, social behaviour and government management
·   Teleworking, tele-conferences and virtual meeting
·   Low power electronics and energy recycling
·   Green computing case studies
·   Energy efficient Internet of Things
·   Energy efficient cloud architecture
·   Energy aware data storage and computation in cloud computing
·   Energy aware scheduling, monitoring, auditing in cloud
·   Case studies of green cloud computing.

 

Submission Guidelines

Submissions must include an abstract, keywords, the e-mail address of the corresponding
author and should not exceed 8 pages for main conference, including tables and figures in
IEEE CS format. The template files for LATEX or WORD can be downloaded here. All paper
submissions must represent original and unpublished work. Each submission will be peer
reviewed by at least three program committee members. Submission of a paper should be
regarded as an undertaking that, should the paper be accepted, at least one of the authors
will register for the conference and present the work. Submit your paper(s) in PDF file at
the CGC2011 submission site: https://www.easychair.org/conferences/?conf=cgc2011. Authors
of accepted papers, or at least one of them, are requested to register and present their
work at the conference, otherwise their papers may be removed from the digital libraries of
IEEE CS and EI after the conference.


Publications

Accepted and presented papers will be included into the IEEE Conference Proceedings
published by IEEE CS Press (pending). Authors of accepted papers, or at least one of them,
are requested to register and present their work at the conference, otherwise their papers
may be removed from the digital libraries of IEEE CS and EI after the conference.

Distinguished papers presented at the conference, after further revision, will be published
in special issues of Concurrency and Computation: Practice and Experience, Computing
(Springer), Journal of Computer and System Sciences.


Honorary Chairs
Ramamohanarao Kotagiri, The University of Melbourne, Australia
Craig Mudge, Pacific Challenge and the University of Adelaide, Australia


General Chairs
Jack Dongarra, University of Tennessee, USA
Ivan Stojmenovic, University of Ottawa, Canada
Albert Zomaya, The University of Sydney, Australia


General Vice-Chairs
Geoffrey Fox, Indiana University, USA
Schahram Dustdar, Vienna University of Technology, Austria
Laurence Yang, St Francis Xavier University, Canada


Program Chairs
Jinjun Chen, University of Technology, Sydney, Australia
Behrooz A. Shirazi, Washington State University, USA


Program Vice-Chairs
Young Choon Lee, The University of Sydney, Australia
Xiang Yang Li, Illinois Institute of Technology, USA
Ching-Hsien (Robert) Hsu, Chung Hua University, Taiwan


Workshop Chairs
Zizhong (Jeffrey) Chen, Colorado School of Mines, USA
Hua Wang, University of Southern Queensland, Australia
Rajiv Ranjan, The University of New South Wales, Australia


Steering Committee
Mohammed Atiquzzaman, University of Oklahoma, USA
Rajkumar Buyya The University of Melbourne, Australia
Jinjun Chen, University of Technology, Sydney, Australia (Chair)
Jack Dongarra, University of Tennessee, USA
Schahram Dustdar, Vienna University of Technology, Austria
Geoffrey Fox, Indiana University, USA
Hai Jin, Huazhong University of Science and Technology, China
Andrzej Goscinski, Deakin University, Australia
Anthony D. Joseph, UC Berkeley, USA
Jordi Torres, Technical University of Catalonia, Spain
Manish Parashar, Rutgers University, USA
Laurent Lefevre, INRIA, France
Ivan Stojmenovic, University of Ottawa, Canada
Laurence T. Yang, St Francis Xavier University, Canada (Chair)


Award Chairs
Andrzej Goscinski, Deakin University, Australia


Panel Chairs
Steve Versteeg, CA Technologies, Australia


Local and Finance Chairs
Chang Liu Swinburne University of Technology, Australia


Conference Secretary and Web Chair
Xuyun Zhang, Swinburne University of Technology, Australia


--
*************************************************
Associate Professor Jinjun Chen (PhD)
Faculty of Engineering and Information Technology
University of Technology, Sydney
PO Box 123, Broadway NSW 2007, Australia.
Email: jinjun.chen <at> gmail.com
URL: http://www.swinflow.org/~jchen/
*************************************************
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Timothy Redmond | 3 May 2011 18:22
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Re: Jdk for WebProtege


WebProtege may currently use java 1.5 but this sure sounds like a java 5 
vs java 6 issue.  How was the webprotege.jar built?  Did the developer 
remember to build with java 5?  Forgetting to build with java 5 is a 
really easy mistake - I have done this myself many times.

-Timothy

On 05/02/2011 12:33 PM, Bill Dickinson wrote:
> On 5/2/2011 2:15 PM, Safran, Tracy (NIH/NCI) [C] wrote:
>> I installed Tomcat 5.5 with jdk1.5.0_10 and dropped in the 
>> webprotege.war.  I get back a "java.lang.UnsupportedVersionError: Bad 
>> version number in .class file" error.  I tried dropping it into JBoss 
>> 4.0.5 also, with the same result.  What jdk does the webprotege.war 
>> operate under?
>>
>> Tracy M. Safran
>> Contractor - SAIC Frederick
>> EVS support
>> 301-402-1537
>>
>> _______________________________________________
>> protege-discussion mailing list
>> protege-discussion <at> lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>>
>> Instructions for unsubscribing: 
>> http://protege.stanford.edu/doc/faq.html#01a.03
> Tracy, it looks like jdk1.5.0_16 currently.  See this link: 
> http://protegewiki.stanford.edu/wiki/WebProtegeDevelopersGuide
>
>
> Bill
> _______________________________________________
> protege-discussion mailing list
> protege-discussion <at> lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>
> Instructions for unsubscribing: 
> http://protege.stanford.edu/doc/faq.html#01a.03

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Re: Jdk for WebProtege

It wasn't built, just downloaded from
http://protegewiki.stanford.edu/images/f/f2/Webprotege_2010.05.12.war.zip and dropped into
the container.

Tracy M. Safran
Contractor - SAIC Frederick
EVS support
301-402-1537

-----Original Message-----
From: Timothy Redmond [mailto:tredmond <at> stanford.edu] 
Sent: Tuesday, May 03, 2011 12:23 PM
To: protege-discussion <at> lists.stanford.edu
Subject: Re: [protege-discussion] Jdk for WebProtege

WebProtege may currently use java 1.5 but this sure sounds like a java 5 
vs java 6 issue.  How was the webprotege.jar built?  Did the developer 
remember to build with java 5?  Forgetting to build with java 5 is a 
really easy mistake - I have done this myself many times.

-Timothy

On 05/02/2011 12:33 PM, Bill Dickinson wrote:
> On 5/2/2011 2:15 PM, Safran, Tracy (NIH/NCI) [C] wrote:
>> I installed Tomcat 5.5 with jdk1.5.0_10 and dropped in the 
>> webprotege.war.  I get back a "java.lang.UnsupportedVersionError: Bad 
>> version number in .class file" error.  I tried dropping it into JBoss 
>> 4.0.5 also, with the same result.  What jdk does the webprotege.war 
>> operate under?
>>
>> Tracy M. Safran
>> Contractor - SAIC Frederick
>> EVS support
>> 301-402-1537
>>
>> _______________________________________________
>> protege-discussion mailing list
>> protege-discussion <at> lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>>
>> Instructions for unsubscribing: 
>> http://protege.stanford.edu/doc/faq.html#01a.03
> Tracy, it looks like jdk1.5.0_16 currently.  See this link: 
> http://protegewiki.stanford.edu/wiki/WebProtegeDevelopersGuide
>
>
> Bill
> _______________________________________________
> protege-discussion mailing list
> protege-discussion <at> lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>
> Instructions for unsubscribing: 
> http://protege.stanford.edu/doc/faq.html#01a.03

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Gmane