Rudy Gunawan | 19 Jan 00:10 2010

MCSIM installation

Hi,

I have been trying to install MCSim on Windows XP. I have already had C 
compilers, both gcc and lcc. 'Mod' has already worked properly (I guess). When 
I did 'mod perc.model', it gives me 'model.c' as expected. Nevertheless, the 
problem arises when I attempt to compile 'model.c', it gave me there errors:

"... undefined reference to _vbModelReinitd"
"... undefined reference to CalcInputs"
"... undefined WinMain <at> 16"

While the last error can be fixed by adding 

int main(int argc, char *argv[]) {
    return 0;
}

into model.c, I have no clue for the first two errors. I have followed the 
aforementioned steps. I put 'mod.exe' into the 'sim' folder. Moreover, I 
move 'perc.model' into the 'sim' folder in order to link it with the other sim 
files. 

So if anybody has some suggestions, please share. Thank you very much.
Anna-Karin Mork | 4 Aug 16:32 2009
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Configure problems

Hi,

I am trying to install McSim to run it on a cluster and can therefore
not use the standard installation (/usr/local/..).  When trying to
configure I get this:

h18n01$ ./configure --prefix=$HOME
LDFLAGS=-L/afs/pdc.kth.se/home/a/akmork/lib       

checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for a BSD-compatible install... /usr/bin/install -c
checking whether make sets $(MAKE)... yes
checking for gzip... yes
checking for gnuplot... no
checking for wish... no
checking for info... yesI have installed the GSL library in my home
directory $HOME/lib.
checking for install-info... no
checking for makeinfo... yes
checking for gv... no
checking for touch... yes
checking for date... yes
(Continue reading)

Frederic Y. Bois | 8 Jun 12:41 2009
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New patch for Windows installation

A new patch has just been posted for installing version 5.3.1 under Windows
(see http://www.gnu.org/software/mcsim/WindowsInstall.html).
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MCSim on Cygwin

Attached is a listing from a build attempt on Cygwin on Windows XP

There are errors in the creation of libmcsim.so

What am I doing wrong ?

-tim
cd ./mod; make
make[1]: Entering directory `/usr/local/src/mcsim/mod'
make[1]: Nothing to be done for `one'.
make[1]: Leaving directory `/usr/local/src/mcsim/mod'
cd ./sim; make lib
make[1]: Entering directory `/usr/local/src/mcsim/sim'
Linking libmcsim.so...
/cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x956): undefined
reference to `_CalcDeriv'
/cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x2b9c): undefined
reference to `_CalcDeriv'
/cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x2ed9): undefined
reference to `_CalcDeriv'
/cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x387d): undefined
reference to `_CalcDeriv'
/cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x3b83): undefined
reference to `_CalcDeriv'
/cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x4212): more undefined
references to `_CalcDeriv' follow
/cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/ccGXujfI.o:mh.c:(.text+0x2bbb): undefined reference to `_InitModel'
/cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/ccGXujfI.o:mh.c:(.text+0x3474): undefined reference to `_InitModel'
(Continue reading)

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"Standard Platform" ?

Ive been trying to use MCSim on both windows and Mac OS (Leopard), and have run in to quirks related to the compilation that prompt the following question:

What is thestandard platform that MCSim development is being done on ? Im assuming by posing this question that the build scripts and tools are all designed for a certain Linux or Unix platform and that a build will run clean on such a platform.

Ive been unsuccessful at finding good help in build MCSim for Mac OS, and am attempting to create a virtual machine running a linux distro, so that I can at least have a reference installation to refer to as I work through what it takes to build for Mac.

Thanks in advance for any help you can give me.

Tim Hansell

Henry M. Jackson Foundation

711 HPW/RHPB

2729 R St, Bldg 837

Wright-Patterson AFB, OH 45433-5707

Phone: (937) 255-4332

E-Mail: Timothy.Hansell <at> WPAFB.AF.MIL

Attachment (smime.p7s): application/x-pkcs7-signature, 7003 bytes
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Help-mcsim mailing list
Help-mcsim <at> gnu.org
http://lists.gnu.org/mailman/listinfo/help-mcsim
Bill Harris | 12 May 04:12 2009

Re: Fwd: questions about MCSim

Cindy,

It's good to see another MCSim user in the Pacific Northwest!  Enjoy
your modeling!

If it's of any use, I created a quick reference card for MCSim that
includes some of its newer features.  You can find it along with a
presentation I made two and a half years ago in Portland at
http://facilitatedsystems.com/links.html#sd

As to your question, I use J (http://www.jsoftware.com/) as my scripting
language, and I've written J scripts to assemble simulation files
programmatically, run the model, and produce graphs.  That worked quite
nicely.  

For a simple example, see http://www.adaptistration.com/?p=1185.  While
that article doesn't contain the scripts, it does show the results.  For
example (as I recall), I had a script that picked percentage ranges for
the three key parameters, assembled a simulation file, ran the
simulation, and plotted and saved the table of eight graphs or the stick
plot you can see.

Bill
--

-- 
Bill Harris                      http://facilitatedsystems.com/weblog/
Facilitated Systems                              Everett, WA 98208 USA
http://facilitatedsystems.com/                  phone: +1 425 337-5541
Zhenhong Li | 14 Apr 21:26 2009
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Fwd: questions about MCSim


Hello,

I am a PhD student at Oregon Health & Science University. I am using MCSim to do my modeling work for hormone
profiles in Fathead Minnows. The question I would like to ask is about "vectors". 

According to MCSim manual, vectors should be defined as <variable-name>'['<integer>']'. Can I define
the <integer> as a variable? I mean, for example, I would like to use a 'n' to replace the <integer>; then in
the first run, I define n=10 (the vector has a length of 10), and in the second run I define n=7 (the vector has
a length of 7), as so on. Then, for different runs, the length of the vector varies.

I tried several times, it seems that the present program does not accept it. Would you please give me any
suggestion? Can I modify the program a little bit to add this function in? and how? Thank you very much!

Best!

Cindy
Frederic Y. Bois | 3 Mar 09:32 2009
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GNU MCSim version 5.3.1 release

Version 5.3.1 of GNU MCSim is now available from
http://www.gnu.org/software/mcsim/.
It fixes some problems with OptimalDesign();

Frederic Bois
Frédéric BOIS | 12 Jan 09:16 2009
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GNU MCSim version 5.3.0 release

Version 5.3.0 of GNU MCSim is now available from
http://www.gnu.org/software/mcsim/.

Frederic Bois
Frederic Y. Bois | 8 Sep 10:10 2008
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new mcsim users list : mcsim-info

A new public list "Info-mcsim" has been set up to provide general announcements
on MCSim.
Frederic Y. Bois | 25 Mar 15:02 2008
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http://www.gnu.org/software/mcsim/

The official MCSim web page can now be found at 
http://www.gnu.org/software/mcsim/
The old page point to there now.

F. Bois

Gmane