A new patch has just been posted for installing version 5.3.1 under Windows (see http://www.gnu.org/software/mcsim/WindowsInstall.html).
Attached is a listing from a build attempt on Cygwin on Windows XP There are errors in the creation of libmcsim.so What am I doing wrong ? -tim
cd ./mod; make make[1]: Entering directory `/usr/local/src/mcsim/mod' make[1]: Nothing to be done for `one'. make[1]: Leaving directory `/usr/local/src/mcsim/mod' cd ./sim; make lib make[1]: Entering directory `/usr/local/src/mcsim/sim' Linking libmcsim.so... /cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x956): undefined reference to `_CalcDeriv' /cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x2b9c): undefined reference to `_CalcDeriv' /cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x2ed9): undefined reference to `_CalcDeriv' /cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x387d): undefined reference to `_CalcDeriv' /cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x3b83): undefined reference to `_CalcDeriv' /cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/cc7g5Fz1.o:lsodes1.c:(.text+0x4212): more undefined references to `_CalcDeriv' follow /cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/ccGXujfI.o:mh.c:(.text+0x2bbb): undefined reference to `_InitModel' /cygdrive/c/DOCUME~1/Tim/LOCALS~1/Temp/ccGXujfI.o:mh.c:(.text+0x3474): undefined reference to `_InitModel'(Continue reading)
I’ve been trying to use MCSim on both windows and Mac OS (Leopard), and have run in to quirks related to the compilation that prompt the following question:
What is the “standard” platform that MCSim development is being done on ? I’m assuming by posing this question that the build scripts and tools are all designed for a certain Linux or Unix platform and that a build will run clean on such a platform.
I’ve been unsuccessful at finding good help in build MCSim for Mac OS, and am attempting to create a virtual machine running a linux distro, so that I can at least have a reference installation to refer to as I work through what it takes to build for Mac.
Thanks in advance for any help you can give me.
Tim Hansell
Henry M. Jackson Foundation
711 HPW/RHPB
2729 R St, Bldg 837
Wright-Patterson AFB, OH 45433-5707
Phone: (937) 255-4332
E-Mail: Timothy.Hansell <at> WPAFB.AF.MIL
_______________________________________________ Help-mcsim mailing list Help-mcsim <at> gnu.org http://lists.gnu.org/mailman/listinfo/help-mcsim
Cindy, It's good to see another MCSim user in the Pacific Northwest! Enjoy your modeling! If it's of any use, I created a quick reference card for MCSim that includes some of its newer features. You can find it along with a presentation I made two and a half years ago in Portland at http://facilitatedsystems.com/links.html#sd As to your question, I use J (http://www.jsoftware.com/) as my scripting language, and I've written J scripts to assemble simulation files programmatically, run the model, and produce graphs. That worked quite nicely. For a simple example, see http://www.adaptistration.com/?p=1185. While that article doesn't contain the scripts, it does show the results. For example (as I recall), I had a script that picked percentage ranges for the three key parameters, assembled a simulation file, ran the simulation, and plotted and saved the table of eight graphs or the stick plot you can see. Bill -- -- Bill Harris http://facilitatedsystems.com/weblog/ Facilitated Systems Everett, WA 98208 USA http://facilitatedsystems.com/ phone: +1 425 337-5541
Hello, I am a PhD student at Oregon Health & Science University. I am using MCSim to do my modeling work for hormone profiles in Fathead Minnows. The question I would like to ask is about "vectors". According to MCSim manual, vectors should be defined as <variable-name>'['<integer>']'. Can I define the <integer> as a variable? I mean, for example, I would like to use a 'n' to replace the <integer>; then in the first run, I define n=10 (the vector has a length of 10), and in the second run I define n=7 (the vector has a length of 7), as so on. Then, for different runs, the length of the vector varies. I tried several times, it seems that the present program does not accept it. Would you please give me any suggestion? Can I modify the program a little bit to add this function in? and how? Thank you very much! Best! Cindy
Version 5.3.1 of GNU MCSim is now available from http://www.gnu.org/software/mcsim/. It fixes some problems with OptimalDesign(); Frederic Bois
Version 5.3.0 of GNU MCSim is now available from http://www.gnu.org/software/mcsim/. Frederic Bois
A new public list "Info-mcsim" has been set up to provide general announcements on MCSim.
The official MCSim web page can now be found at http://www.gnu.org/software/mcsim/ The old page point to there now. F. Bois
All the source code of MCSim is now accessible online via CVS on GNU Savannah. You can fetch the latest code (almost!) as well as past versions. You can also envision contributing to the project ;^)... Just go to http://cvs.savannah.gnu.org/viewvc/mcsim/?root=mcsim (for help go to https://savannah.gnu.org/cvs/?group=mcsim) From now on maintenance an diffusion of the software will be made via Savannah. F. Bois
The version 5.2.beta of MCSim is now available at http://fredomatic.free.fr This is a technical upgrade before porting to the GNU official development platform.
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