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[jira] [Updated] (UIMA-4212) Add methods to CasUtil to select and index intersecting annotations


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https://issues.apache.org/jira/browse/UIMA-4212?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Richard Eckart de Castilho updated UIMA-4212:
---------------------------------------------
    Fix Version/s:     (was: 2.2.0uimaFIT)
                   2.3.0uimaFIT

> Add methods to CasUtil to select and index intersecting annotations
> -------------------------------------------------------------------
>
>                 Key: UIMA-4212
>                 URL: https://issues.apache.org/jira/browse/UIMA-4212
>             Project: UIMA
>          Issue Type: Improvement
>          Components: uimaFIT
>            Reporter: Jose Tomas Atria
>            Assignee: Richard Eckart de Castilho
>            Priority: Minor
>              Labels: newbie, patch
>             Fix For: 2.3.0uimaFIT
>
>         Attachments: selectIntersects.patch
>
>
> CasUtil includes methods to select and index covered and covering annotations of a given type (ie,
supersets and subsets of an annotation's interval).
> The attached patch adds methods to select and index intersecting annotations,  either including
covering annotations or not.
(Continue reading)

Lou DeGenaro (JIRA | 8 Feb 15:50 2016
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[jira] [Reopened] (UIMA-4774) DUCC Web Server (WS) Pgin and Swap columns for (Managed) Reservations page


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https://issues.apache.org/jira/browse/UIMA-4774?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Lou DeGenaro reopened UIMA-4774:
--------------------------------

WS should display Swap in red when > 0.

> DUCC Web Server (WS) Pgin and Swap columns for (Managed) Reservations page
> --------------------------------------------------------------------------
>
>                 Key: UIMA-4774
>                 URL: https://issues.apache.org/jira/browse/UIMA-4774
>             Project: UIMA
>          Issue Type: Improvement
>          Components: DUCC
>            Reporter: Lou DeGenaro
>            Assignee: Lou DeGenaro
>             Fix For: 2.1.0-Ducc
>
>
> The Jobs and Services pages have columns for PgIn and Swap.  The same columns should be added to the
Reservations page, and should be filled in for Managed Reservations (aka Arbitrary Processes).

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José Tomás Atria | 5 Feb 00:32 2016
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Re: [jira] [Commented] (UIMA-4212) Add methods to CasUtil to select and index intersecting annotations

Sorry for not getting back to you about this before. I've been very busy
trying to finish my doctoral dissertation :)

In brief: no, I'm afraid I don't have any tests. I was totally new to any
sort of serious programming when I wrote those methods, so I had no idea
what unit tests were.

I'm a little swamped right now between teaching and research, but as soon
as I have a moment to spare, I'll look into it and incorporate your
suggestions (and whip up some tests).

Thanks for considering the patch!

On Wed, Dec 23, 2015 at 7:40 PM, Richard Eckart de Castilho (JIRA) <
dev@...> wrote:

>
>     [
> https://issues.apache.org/jira/browse/UIMA-4212?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15070349#comment-15070349
> ]
>
> Richard Eckart de Castilho commented on UIMA-4212:
> --------------------------------------------------
>
> I've had a look at the patch (finally!)
>
> * You don't have any unit tests for the new method by any chance, do you?
> * I am pretty sure the type subsumption test in the offsets-based
> selectIntersects is not needed
> * given that the annotation index is sorted, it should be possible to stop
(Continue reading)

Lou DeGenaro (JIRA | 8 Feb 14:54 2016
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[jira] [Resolved] (UIMA-4774) DUCC Web Server (WS) Pgin and Swap columns for (Managed) Reservations page


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https://issues.apache.org/jira/browse/UIMA-4774?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Lou DeGenaro resolved UIMA-4774.
--------------------------------
    Resolution: Fixed

Fix: WS does not display PgIn and Swap for Managed Reservation details.

> DUCC Web Server (WS) Pgin and Swap columns for (Managed) Reservations page
> --------------------------------------------------------------------------
>
>                 Key: UIMA-4774
>                 URL: https://issues.apache.org/jira/browse/UIMA-4774
>             Project: UIMA
>          Issue Type: Improvement
>          Components: DUCC
>            Reporter: Lou DeGenaro
>            Assignee: Lou DeGenaro
>             Fix For: 2.1.0-Ducc
>
>
> The Jobs and Services pages have columns for PgIn and Swap.  The same columns should be added to the
Reservations page, and should be filled in for Managed Reservations (aka Arbitrary Processes).

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Lou DeGenaro (JIRA | 8 Feb 14:54 2016
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[jira] [Closed] (UIMA-4774) DUCC Web Server (WS) Pgin and Swap columns for (Managed) Reservations page


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https://issues.apache.org/jira/browse/UIMA-4774?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Lou DeGenaro closed UIMA-4774.
------------------------------

> DUCC Web Server (WS) Pgin and Swap columns for (Managed) Reservations page
> --------------------------------------------------------------------------
>
>                 Key: UIMA-4774
>                 URL: https://issues.apache.org/jira/browse/UIMA-4774
>             Project: UIMA
>          Issue Type: Improvement
>          Components: DUCC
>            Reporter: Lou DeGenaro
>            Assignee: Lou DeGenaro
>             Fix For: 2.1.0-Ducc
>
>
> The Jobs and Services pages have columns for PgIn and Swap.  The same columns should be added to the
Reservations page, and should be filled in for Managed Reservations (aka Arbitrary Processes).

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Peter Klügl (JIRA | 8 Feb 10:55 2016
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[jira] [Created] (UIMA-4789) Ruta: fix license of GermanNovels example project

Peter Klügl created UIMA-4789:
---------------------------------

             Summary: Ruta: fix license of GermanNovels example project
                 Key: UIMA-4789
                 URL: https://issues.apache.org/jira/browse/UIMA-4789
             Project: UIMA
          Issue Type: Task
          Components: ruta
    Affects Versions: 2.3.0ruta
            Reporter: Peter Klügl
            Assignee: Peter Klügl

See discussion on dev list:

>> - is it necessary that the GermanNovels example contains GeneratedDKPRoCoreTypes.xml - can these not
be obtained through Maven? If it is necessary, provenance information would be good.
>
> It was necessary when the rules were contributed, but it would be
> possible now with some new features. I do not have the time to upgrade
> the project (its priority is too low and it would require to change the
> tutorial). I could add provenance information. I assume that it should
> be in a README file but not in the NOTICE file, or is there an issue
> converning the DKPro type systems?

The DKPro Core type systems are covered by ASL (although for some reason
there are no ASL headers in the original DKPro Core XML files...). So
in principle there is no problem, and because the original files don't have
ASL headers, they also were not stripped by the aggregation process - again
no problem.
(Continue reading)

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[jira] [Reopened] (UIMA-4563) Traffic monitoring using Google Analytics


     [
https://issues.apache.org/jira/browse/UIMA-4563?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Richard Eckart de Castilho reopened UIMA-4563:
----------------------------------------------

We have been using one property with three views to collect data. The views were meant to collect:

- DUCC usage (http)
- UIMA Website (https)
- UIMA Website (http)

They had different host names and protocols set up in their settings.

However, it appears that all accesses were counted for all views - no separation was made.

I have now tried to change the setup of the views:

- All traffic
- UIMA DUCC (using hostname filter)
- UIMA Website (using hostname filter)

When I set up the config filters, the system told me that they would not have made any effect on the traffic
from the last few days/weeks (whatever). Either the filters are not working, or all traffic in the
respective period went only to the website and not to DUCC.

So let's see what happens to the views now. Apparently, these settings do not apply retroactively.

Leaving this issue open for the moment as we need to double-check the config in a couple of weeks.
(Continue reading)

Lou DeGenaro (JIRA | 5 Feb 21:31 2016
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[jira] [Resolved] (UIMA-4753) DUCC Web Server (WS) displays misleading job reason


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https://issues.apache.org/jira/browse/UIMA-4753?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Lou DeGenaro resolved UIMA-4753.
--------------------------------
    Resolution: Fixed

Orchestrator was checking wrong field for errors.  Use jdStatusReport.  Also fixes incorrect reason
displayed by user's DUCC job monitor.

> DUCC Web Server (WS) displays misleading job reason
> ---------------------------------------------------
>
>                 Key: UIMA-4753
>                 URL: https://issues.apache.org/jira/browse/UIMA-4753
>             Project: UIMA
>          Issue Type: Bug
>          Components: DUCC
>            Reporter: Lou DeGenaro
>            Assignee: Lou DeGenaro
>             Fix For: 2.1.0-Ducc
>
>
> If a job goes to Completed state and not all work items are finished, then the Reason should be Error not
Warning.  In such case, the corresponding hover should be "some work items not processed" or similar.
> That is, the Reason should be Error whenever the job goes to Completed and work items Total != Done.

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Lou DeGenaro (JIRA | 5 Feb 21:31 2016
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[jira] [Closed] (UIMA-4753) DUCC Web Server (WS) displays misleading job reason


     [
https://issues.apache.org/jira/browse/UIMA-4753?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Lou DeGenaro closed UIMA-4753.
------------------------------

> DUCC Web Server (WS) displays misleading job reason
> ---------------------------------------------------
>
>                 Key: UIMA-4753
>                 URL: https://issues.apache.org/jira/browse/UIMA-4753
>             Project: UIMA
>          Issue Type: Bug
>          Components: DUCC
>            Reporter: Lou DeGenaro
>            Assignee: Lou DeGenaro
>             Fix For: 2.1.0-Ducc
>
>
> If a job goes to Completed state and not all work items are finished, then the Reason should be Error not
Warning.  In such case, the corresponding hover should be "some work items not processed" or similar.
> That is, the Reason should be Error whenever the job goes to Completed and work items Total != Done.

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Lou DeGenaro (JIRA | 5 Feb 21:30 2016
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[jira] [Work started] (UIMA-4753) DUCC Web Server (WS) displays misleading job reason


     [
https://issues.apache.org/jira/browse/UIMA-4753?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Work on UIMA-4753 started by Lou DeGenaro.
------------------------------------------
> DUCC Web Server (WS) displays misleading job reason
> ---------------------------------------------------
>
>                 Key: UIMA-4753
>                 URL: https://issues.apache.org/jira/browse/UIMA-4753
>             Project: UIMA
>          Issue Type: Bug
>          Components: DUCC
>            Reporter: Lou DeGenaro
>            Assignee: Lou DeGenaro
>             Fix For: 2.1.0-Ducc
>
>
> If a job goes to Completed state and not all work items are finished, then the Reason should be Error not
Warning.  In such case, the corresponding hover should be "some work items not processed" or similar.
> That is, the Reason should be Error whenever the job goes to Completed and work items Total != Done.

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[jira] [Created] (UIMA-4788) Reader close method invoked twice by JCasIterator

Richard Eckart de Castilho created UIMA-4788:
------------------------------------------------

             Summary: Reader close method invoked twice by JCasIterator
                 Key: UIMA-4788
                 URL: https://issues.apache.org/jira/browse/UIMA-4788
             Project: UIMA
          Issue Type: Bug
          Components: uimaFIT
    Affects Versions: 2.1.0uimaFIT
            Reporter: Richard Eckart de Castilho
            Priority: Minor

Apparently, the JCasIterator from uimaFIT invokes the close method of readers twice - possible for other
components as well:

First call

{noformat}
   at MyReader.close(MyReader.java...)
   at org.apache.uima.fit.util.LifeCycleUtil.close(LifeCycleUtil.java:79)
   at org.apache.uima.fit.pipeline.JCasIterator.destroy(JCasIterator.java:189)
   at org.apache.uima.fit.pipeline.JCasIterator.next(JCasIterator.java:149)
   at org.apache.uima.fit.pipeline.JCasIterator.next(JCasIterator.java:48)
   at MyReaderTest(MyReader.java...)
{noformat}

Second call

{noformat}
(Continue reading)


Gmane