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Marshall Schor (JIRA | 21 May 2013 23:10
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[jira] [Created] (UIMA-2934) remove from sorted index broken if FS not in index

Marshall Schor created UIMA-2934:
------------------------------------

             Summary: remove from sorted index broken if FS not in index
                 Key: UIMA-2934
                 URL: https://issues.apache.org/jira/browse/UIMA-2934
             Project: UIMA
          Issue Type: Bug
          Components: Core Java Framework
            Reporter: Marshall Schor
            Assignee: Marshall Schor
             Fix For: 2.4.1SDK

The "improvement" to make remove-from-index work faster on sorted indexes by doing a binary search, is
broken - when the element isn't found, it throws an index-array-out-of-bounds exception.

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Peter Klügl (JIRA | 21 May 2013 19:33
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[jira] [Created] (UIMA-2933) Rute type matcher selects wrong annoation with length 0

Peter Klügl created UIMA-2933:
---------------------------------

             Summary: Rute type matcher selects wrong annoation with length 0
                 Key: UIMA-2933
                 URL: https://issues.apache.org/jira/browse/UIMA-2933
             Project: UIMA
          Issue Type: Bug
          Components: ruta
    Affects Versions: 2.0.1ruta
            Reporter: Peter Klügl
            Assignee: Peter Klügl
             Fix For: 2.0.2ruta

Rute type matcher selects wrong annoation with length 0. It is acutally the correct "next" annotations in
the index, but not for the rule element matching.

Armin Wegner reported:
{noformat}
DECLARE Date;
Document{->RETAINTYPE(BREAK, SPACE)};
NUM{REGEXP("\\d\\d")->MARK(Date, 1, 2)} PERIOD;
{noformat}
on the input text
{noformat}
12. Mai 1803
{noformat}
I didn't use SourceDocumentInformation in the rule. I was just in the way. The first token with RutaBasic
was NUM(0, 2), that is "12", and the second token was SourceDocumentInformation(0, 0). So the rule failed
which is correct.
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Jerry Cwiklik (JIRA | 21 May 2013 19:31
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[jira] [Closed] (UIMA-2882) Modify DUCC's Agent to call external script to cleanup rogue processes


     [
https://issues.apache.org/jira/browse/UIMA-2882?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Jerry Cwiklik closed UIMA-2882.
-------------------------------

    Resolution: Fixed

> Modify DUCC's Agent to call external script to cleanup rogue processes
> ----------------------------------------------------------------------
>
>                 Key: UIMA-2882
>                 URL: https://issues.apache.org/jira/browse/UIMA-2882
>             Project: UIMA
>          Issue Type: Task
>          Components: DUCC
>            Reporter: Jerry Cwiklik
>            Assignee: Jerry Cwiklik
>             Fix For: 1.0-Ducc
>
>
> Currenty, the agent supports killing rogue processes using kill -9 when this feature is enabled in
ducc.properties. Need a different mechanism which would be external to the agent. Instead of invoking a
kill command, the agent calls a script configured in the ducc.properties which will do the cleanup. The
agent will pass a PID of the process to the script. Ducc will include a sample script which will do nothing.
It would be up to the administrator to setup appropriate steps needed to stop the rogue process.  

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Jerry Cwiklik (JIRA | 21 May 2013 19:29
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[jira] [Closed] (UIMA-2908) Ducc's AbstractDuccComponent dumps messages to stdout


     [
https://issues.apache.org/jira/browse/UIMA-2908?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Jerry Cwiklik closed UIMA-2908.
-------------------------------

    Resolution: Fixed

> Ducc's AbstractDuccComponent dumps messages to stdout
> -----------------------------------------------------
>
>                 Key: UIMA-2908
>                 URL: https://issues.apache.org/jira/browse/UIMA-2908
>             Project: UIMA
>          Issue Type: Bug
>          Components: DUCC
>            Reporter: Jerry Cwiklik
>            Assignee: Jerry Cwiklik
>            Priority: Minor
>             Fix For: 1.0-Ducc
>
>
> AbstractDuccComponent class keeps dumping messages to stdout instead of component's log. The stdout is
not being redirected to the log and thus useful info is lost.

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Burn Lewis (JIRA | 21 May 2013 19:27
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[jira] [Created] (UIMA-2932) CLI needs to specify how to start a custom service

Burn Lewis created UIMA-2932:
--------------------------------

             Summary: CLI needs to specify how to start a custom service
                 Key: UIMA-2932
                 URL: https://issues.apache.org/jira/browse/UIMA-2932
             Project: UIMA
          Issue Type: Bug
          Components: DUCC
            Reporter: Burn Lewis
            Assignee: Burn Lewis
             Fix For: 1.0-Ducc

Currently CLI can create only ping-only custom services

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Peter Klügl (JIRA | 21 May 2013 17:57
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[jira] [Created] (UIMA-2931) Annotation mode in CAS Editor set to non-existing type

Peter Klügl created UIMA-2931:
---------------------------------

             Summary: Annotation mode in CAS Editor set to non-existing type
                 Key: UIMA-2931
                 URL: https://issues.apache.org/jira/browse/UIMA-2931
             Project: UIMA
          Issue Type: Bug
          Components: CasEditor
    Affects Versions: 2.4.0SDK
            Reporter: Peter Klügl
            Priority: Minor
             Fix For: 2.4.1SDK

If the annotation mode in the CAS Editor is set to a type that is currently not present in the type system that
was aused to open the CAS, then a NPE is thrown in AnnotationEditor.setEditorSessionPreferences() in
line 
{noformat}
sessionStore.setValue("LastUsedModeType", getAnnotationMode().getName());
{noformat}

.. I know, I switch type system too often...

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Lou DeGenaro (JIRA | 21 May 2013 17:33
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[jira] [Created] (UIMA-2930) DUCC webserver (WS) should make available button(s) for Job Process (JP) cancellation

Lou DeGenaro created UIMA-2930:
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             Summary: DUCC webserver (WS) should make available button(s) for Job Process (JP) cancellation
                 Key: UIMA-2930
                 URL: https://issues.apache.org/jira/browse/UIMA-2930
             Project: UIMA
          Issue Type: Improvement
          Components: DUCC
            Reporter: Lou DeGenaro
            Assignee: Lou DeGenaro
             Fix For: 1.0-Ducc

When machines goes down, jobs with work items located on them become stuck (in limbo).  This situation is
handled by the JobCancel command using the --dpid flag for each stuck Job Process (JP).

The webserver (WS) can provide assistance in the form of helpful buttons to make this task easier.

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Jim Challenger (JIRA | 21 May 2013 15:33
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[jira] [Assigned] (UIMA-2929) Move some of the local site checking in to the global uima-ducc scripting.


     [
https://issues.apache.org/jira/browse/UIMA-2929?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Jim Challenger reassigned UIMA-2929:
------------------------------------

    Assignee: Jim Challenger

> Move some of the local site checking in to the global uima-ducc scripting.
> --------------------------------------------------------------------------
>
>                 Key: UIMA-2929
>                 URL: https://issues.apache.org/jira/browse/UIMA-2929
>             Project: UIMA
>          Issue Type: Bug
>          Components: DUCC
>            Reporter: Jim Challenger
>            Assignee: Jim Challenger
>             Fix For: 1.0-Ducc
>
>
> - all nodes' ducc_ling must match DUCC head's ducc_ling version
> - a node must have a working java.  If the DUCC head does not nothing is started in ducc_start.
> - give a warning if the Orchestrator lock is found during startup
> - check for clock skew from the DUCC head and don't start a node that is not within acceptable bounds
> - on stop_ducc, if the broker is automanaged, stop_ducc needs to hang longer before returning to make sure
things are shutdown 

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Jim Challenger (JIRA | 21 May 2013 15:33
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[jira] [Created] (UIMA-2929) Move some of the local site checking in to the global uima-ducc scripting.

Jim Challenger created UIMA-2929:
------------------------------------

             Summary: Move some of the local site checking in to the global uima-ducc scripting.
                 Key: UIMA-2929
                 URL: https://issues.apache.org/jira/browse/UIMA-2929
             Project: UIMA
          Issue Type: Bug
          Components: DUCC
            Reporter: Jim Challenger
             Fix For: 1.0-Ducc

- all nodes' ducc_ling must match DUCC head's ducc_ling version
- a node must have a working java.  If the DUCC head does not nothing is started in ducc_start.
- give a warning if the Orchestrator lock is found during startup
- check for clock skew from the DUCC head and don't start a node that is not within acceptable bounds
- on stop_ducc, if the broker is automanaged, stop_ducc needs to hang longer before returning to make sure
things are shutdown 

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Jim Challenger (JIRA | 21 May 2013 15:07
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[jira] [Closed] (UIMA-2852) JConsole URL links not working


     [
https://issues.apache.org/jira/browse/UIMA-2852?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Jim Challenger closed UIMA-2852.
--------------------------------

    
> JConsole URL links not working
> ------------------------------
>
>                 Key: UIMA-2852
>                 URL: https://issues.apache.org/jira/browse/UIMA-2852
>             Project: UIMA
>          Issue Type: Bug
>          Components: DUCC
>            Reporter: Lou DeGenaro
>            Assignee: Jim Challenger
>            Priority: Minor
>
> 1. (ld) Create ANT script to properly establish signed java webstart jar file
> 2. (ld) Update WS to employ signed jar file within generated .jnlp
> 3. (jc) Installation script must invoke ANT script to create signed jar file and deploy to expected WS location

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Jim Challenger (JIRA | 21 May 2013 15:07
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[jira] [Resolved] (UIMA-2852) JConsole URL links not working


     [
https://issues.apache.org/jira/browse/UIMA-2852?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Jim Challenger resolved UIMA-2852.
----------------------------------

    Resolution: Fixed

Added simple sign_jconsole_jar script to drive the signing processes.

> JConsole URL links not working
> ------------------------------
>
>                 Key: UIMA-2852
>                 URL: https://issues.apache.org/jira/browse/UIMA-2852
>             Project: UIMA
>          Issue Type: Bug
>          Components: DUCC
>            Reporter: Lou DeGenaro
>            Assignee: Jim Challenger
>            Priority: Minor
>
> 1. (ld) Create ANT script to properly establish signed java webstart jar file
> 2. (ld) Update WS to employ signed jar file within generated .jnlp
> 3. (jc) Installation script must invoke ANT script to create signed jar file and deploy to expected WS location

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